View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19358_low_23 (Length: 488)

Name: NF19358_low_23
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19358_low_23
NF19358_low_23
[»] chr7 (2 HSPs)
chr7 (1-330)||(45468035-45468364)
chr7 (347-383)||(28440251-28440287)
[»] chr8 (1 HSPs)
chr8 (344-470)||(11764002-11764129)
[»] chr1 (3 HSPs)
chr1 (403-439)||(781185-781221)
chr1 (347-387)||(625592-625632)
chr1 (362-438)||(44422668-44422744)
[»] chr6 (2 HSPs)
chr6 (347-437)||(34404059-34404149)
chr6 (402-438)||(10154190-10154226)
[»] chr3 (1 HSPs)
chr3 (406-447)||(28306118-28306159)
[»] chr5 (1 HSPs)
chr5 (347-387)||(20028500-20028540)
[»] chr2 (2 HSPs)
chr2 (346-422)||(11863659-11863735)
chr2 (402-438)||(37053563-37053599)


Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 45468035 - 45468364
Alignment:
Q  1 agagaaagagaaattagagaatggtgtgaatagtggtgagagtgatcagagtactggggtgatggtgattactaggcctaaaggtgggaataggagtttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45468035 agagaaagagaaattagagaatggtgtgaatagtggtgagagtgatcagagtactggggtgatggtgattactaggcctaaaggtgggaataggagtttg 45468134  T
Q  101 tgtatggatttggaagaagttaaagcttgtagagatcttggatttgagttggaacatgaaagaatttctgctgtttctttctctaattcaacacttgata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45468135 tgtatggatttggaagaagttaaagcttgtagagatcttggatttgagttggaacatgaaagaatttctgctgtttctttctctaattcaacacttgata 45468234  T
Q  201 ctagcagtggtggtaattcacctattgctaattggcgaatctccggtcccggtaggtgtcaattaggtcgatttattcgagtttatttactgtcataaac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  45468235 ctagcagtggtggtaattcacctattgctaattggcgaatctccggtcccggtaggtctcaattaggtcgatttattcgagtttatttactgtcataaac 45468334  T
Q  301 aatataaaattgtatgaaaacaatttatga 330  Q
    ||||||||||||||||||||||||||||||    
T  45468335 aatataaaattgtatgaaaacaatttatga 45468364  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 383
Target Start/End: Complemental strand, 28440287 - 28440251
Alignment:
Q  347 ataagttattttcaacttatttttataagctcttcat 383  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  28440287 ataagtttttttcaacttatttttataagcccttcat 28440251  T

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Target: chr8 (Bit Score: 108; Significance: 5e-54; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 344 - 470
Target Start/End: Original strand, 11764002 - 11764129
Alignment:
Q  344 ctcataagttatttt-caacttatttttataagctcttcataatacggtatagaaataccttataacttatatgaaaacagtttcagtttattttactat 442  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11764002 ctcataagttatttttcaacttatttttataagcacttcataatacggtatggaaataccttataacttatatgaaaacagtttcagtttattttactat 11764101  T
Q  443 ttgttgattgattactttaatgcttttc 470  Q
    ||||||||||||||||| ||||||||||    
T  11764102 ttgttgattgattacttgaatgcttttc 11764129  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 439
Target Start/End: Original strand, 781185 - 781221
Alignment:
Q  403 ttataacttatatgaaaacagtttcagtttattttac 439  Q
    |||||||||||||||||||||||||| ||||||||||    
T  781185 ttataacttatatgaaaacagtttcactttattttac 781221  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 387
Target Start/End: Complemental strand, 625632 - 625592
Alignment:
Q  347 ataagttattttcaacttatttttataagctcttcataata 387  Q
    ||||||| |||||||||||||| ||||||||||||| ||||    
T  625632 ataagttgttttcaacttatttctataagctcttcagaata 625592  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 438
Target Start/End: Complemental strand, 44422744 - 44422668
Alignment:
Q  362 cttatttttataagctcttcataatacggtatagaaataccttataacttatatgaaaacagtttcagtttatttta 438  Q
    |||||||| ||||||||| ||  |||   |||| ||||| |||||| |||||||||||||||||| || ||||||||    
T  44422744 cttattttcataagctctccaggatagcttataaaaatagcttatagcttatatgaaaacagtttgagattatttta 44422668  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 437
Target Start/End: Complemental strand, 34404149 - 34404059
Alignment:
Q  347 ataagttattttcaacttatttttataagctcttcataatacggtatagaaataccttataacttatatgaaaacagtttcagtttatttt 437  Q
    ||||||| |||||||||||||| |||||||||| |||||||   | | |||| |  | ||| |||||||||||||||| ||| ||||||||    
T  34404149 ataagttgttttcaacttatttctataagctctccataatagcatctggaaacaaatgatatcttatatgaaaacagtctcactttatttt 34404059  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 438
Target Start/End: Complemental strand, 10154226 - 10154190
Alignment:
Q  402 cttataacttatatgaaaacagtttcagtttatttta 438  Q
    ||||||||||||||||||||||||| | |||||||||    
T  10154226 cttataacttatatgaaaacagtttgactttatttta 10154190  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 28306159 - 28306118
Alignment:
Q  406 taacttatatgaaaacagtttcagtttattttactatttgtt 447  Q
    ||||||||||||||||||||| | ||||||||||| ||||||    
T  28306159 taacttatatgaaaacagtttgactttattttactttttgtt 28306118  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 387
Target Start/End: Original strand, 20028500 - 20028540
Alignment:
Q  347 ataagttattttcaacttatttttataagctcttcataata 387  Q
    ||||||| |||||| ||||||| ||||||||||||||||||    
T  20028500 ataagttgttttcagcttatttctataagctcttcataata 20028540  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 422
Target Start/End: Original strand, 11863659 - 11863735
Alignment:
Q  346 cataagttattttcaacttatttttataagctcttcataatacggtatagaaataccttataacttatatgaaaaca 422  Q
    ||||||||||||||||||||||||| ||| |||| ||| ||| |  ||  ||| | ||||||| |||||||||||||    
T  11863659 cataagttattttcaacttatttttttaacctctccatgataagtaatgaaaacagcttataaattatatgaaaaca 11863735  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 438
Target Start/End: Complemental strand, 37053599 - 37053563
Alignment:
Q  402 cttataacttatatgaaaacagtttcagtttatttta 438  Q
    ||||||||||||||||||||||||| | |||||||||    
T  37053599 cttataacttatatgaaaacagtttgactttatttta 37053563  T

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