View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_24 (Length: 486)
Name: NF19358_low_24
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Original strand, 43908724 - 43909193
Alignment:
| Q |
1 |
gttgaagctctacctgctgaaaagccgaaaccaagatcagtgagaaggagacctctaaaaccaccacctgttgaaaacacagttaaagatttttctgaaa |
100 |
Q |
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| T |
43908724 |
gttgaagctctacctgctgaaaagccgaaaccaagatcagtgagaaggagacctctaaaaccaccacctgttgaaaacacagttaaagatttttctgaaa |
43908823 |
T |
|
| Q |
101 |
caggtggtgcattggatgaagaaatgatattagatggacttttaatgcgatacgttaagaaacaaactcctaatgaacctggcatgggaaaagaacatgt |
200 |
Q |
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| T |
43908824 |
caggtggtgcattggatgaagaaatgatattagatggacttttaatgcgatacgttaacaaacaaactcctaatgaacctggcatgggaaaagaacatgt |
43908923 |
T |
|
| Q |
201 |
aaaggatcaaaatagaaggtatgaaaaatcaagttcacctgttgctaaaacttggagaagaaaatctcttcctcaaagagaatcaagtaggatggataca |
300 |
Q |
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| T |
43908924 |
aaaggatcaaaatagaaggtatgaaaaatcaagttcacctgttgctaaaacttggagaagaaaatctcttcctcaaagagaatcaagtaggatggataca |
43909023 |
T |
|
| Q |
301 |
ttacaagcaaatgatagagctacttccttagtacctgaaatgatgaggacaacaaccacagggcatgtgcatcctagtctaccagattatgaggacttgt |
400 |
Q |
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| T |
43909024 |
ttacaagcaaatgatagagctacttccttagtacctgaaatgatgaggacaacaaccacagggcatgtgcatcctagtctaccagattatgaggacttgt |
43909123 |
T |
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| Q |
401 |
cggatcgtctagcatctctcagaagaacataatgccctatgatattttttgtaaatttggattggatatt |
470 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43909124 |
cggatcgtctagcatctctcagaagaacataatgccctatgatattttttgtaactttggattggatatt |
43909193 |
T |
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