View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_27 (Length: 459)
Name: NF19358_low_27
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 16579207 - 16579646
Alignment:
| Q |
1 |
ccagatccatcttctatgcctttgtataatttgccaccaaatcttcttcctaatggtggtcatgtggggcatgaagcttttccatggcctcatggaatta |
100 |
Q |
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| T |
16579207 |
ccagatccatcttctatgcctttgtataatttgccaccaaatcttcttcctaatggtggtcatgtgggacatgaagcttttccatggcctcatggaatta |
16579306 |
T |
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| Q |
101 |
ggccaccctactgaaaaaatatgagatgattacaatttataagaaattgaagaaaggagttaccaagtgtttttagagtaatggaataaatatatatgta |
200 |
Q |
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| T |
16579307 |
ggccaccctactgaaaaaatatgagatgattacaatttataagaaattgaagaaaggagttaccaagtgtttttagagtaatggaataaatatatatgta |
16579406 |
T |
|
| Q |
201 |
gtattatagtgtttgtgatggaaatgtgatgagaattgagaagtgagaagaggaagaaatgttattatatatgattttatcactctctatgtatgtgtat |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
16579407 |
gtattatagtgtttgtgatgaaaatgtgatgagaattgagaagtgagaagaggaagaaatgttattatatataattttatcactctctatgtatgtgtat |
16579506 |
T |
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| Q |
301 |
atgattattaagtaagaactttctgtgtgtttcctttttagttgtgttttggaatagaaaaggtgatgatgggnnnnnnnnnnnnnngaattgatttct- |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||| |
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| T |
16579507 |
atgattattaagtaagaactttctgtgtgtttcctttttagttgtgttttggaataaaaaagatgatgatgggttttttttgttttttaattgatttctg |
16579606 |
T |
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| Q |
400 |
-tgaattgattatcatgtttatattgtccaggatcaagta |
438 |
Q |
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| T |
16579607 |
atgaattgattatcatgtttatattctccatgatcaagta |
16579646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 32802709 - 32802668
Alignment:
| Q |
1 |
ccagatccatcttctatgcctttgtataatttgccaccaaat |
42 |
Q |
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|||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
32802709 |
ccagatccttcttccatgcctttgtataatttgccaccaaat |
32802668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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