View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_28 (Length: 458)
Name: NF19358_low_28
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 4e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 109 - 356
Target Start/End: Original strand, 31459420 - 31459670
Alignment:
| Q |
109 |
tttcttggaagaaactaattgtgttaaaaaagttatttaagtaaaaaggtaatagcctaagaaccaactttaactttgaggnnnnnnnnnnnnnnnngtc |
208 |
Q |
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| T |
31459420 |
tttcttggaagaaactaattgtgttaaaaaagttatttaggtaaaaaggtaatagcctaagaaccaactttaactttgaggttttttttttttttttttt |
31459519 |
T |
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| Q |
209 |
tt---gggaacttatttaagtgaagactgttaacattagagtttttcggctccccaaacatccagactagagccaaagtttgagagaagtaaattaacaa |
305 |
Q |
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| T |
31459520 |
ttttggggaacttatttaagtgaagactgttaacattagagtttttcggctcctcaaacatccagactagagccaaagtttgagagaggtaaactaacaa |
31459619 |
T |
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| Q |
306 |
gnnnnnnnaaagagcaaattttttatttaaaggacgtaacttagcaacaat |
356 |
Q |
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| T |
31459620 |
gtttttttaaagaacaaattttttatttaaaggacgtaacttagcaacaat |
31459670 |
T |
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