View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_29 (Length: 443)
Name: NF19358_low_29
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 191 - 319
Target Start/End: Original strand, 25814798 - 25814926
Alignment:
| Q |
191 |
gaaaagagtatctcaatgaatcttaatgagcaacctttaagggtggataatccactaatactaactccaaacttctatcaaatgaaagaagataaagtgt |
290 |
Q |
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| T |
25814798 |
gaaaagagtatctcaatgaatcttaatgagcaacctttaagggtggataatccactaatactaactccaaacttctatcaaatgaaagaagataaagtgt |
25814897 |
T |
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| Q |
291 |
agaaagaagaagaaatgatggaatgggtc |
319 |
Q |
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| T |
25814898 |
agaaagaagaagaaatgatggaatgggtc |
25814926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 25814608 - 25814736
Alignment:
| Q |
1 |
tcacttgcactagcccttcttctacccgaccggaagaatttatcattaaaagtaagggtcatgctaacttaatgtccctgaggcacccatcaaagaaaca |
100 |
Q |
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| T |
25814608 |
tcacttgcactagcccttcttctacccgaccggaagaatttatcattaaaagtaagggtcatgctaacttaatgtccctcaagcatccgtcaaagaaaca |
25814707 |
T |
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| Q |
101 |
aaaagaaaaagttttcattgaaaataata |
129 |
Q |
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| T |
25814708 |
aaaagaaaaagttttcattgaaaataata |
25814736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 374 - 413
Target Start/End: Original strand, 25815600 - 25815639
Alignment:
| Q |
374 |
caagtaaagttgtcatgtttgaagtacacacactaaatat |
413 |
Q |
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| T |
25815600 |
caagtaaagttgtcatgtttgaagtacgcacactaaatat |
25815639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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