View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_3 (Length: 780)
Name: NF19358_low_3
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 713; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 713; E-Value: 0
Query Start/End: Original strand, 1 - 766
Target Start/End: Original strand, 35190944 - 35191709
Alignment:
| Q |
1 |
ttaatgcaagactcgtaacannnnnnnctctccgtgtttagtttataggggcaacaatggggtcatctgaattacagatacaaactgacagtggtctaat |
100 |
Q |
| |
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||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35190944 |
ttaatgcgagactcgtaacatttttttctctccgtgtttagtttataggggcaacaatggggtcatctgaattacagatacaaactgacagtggtctaat |
35191043 |
T |
|
| Q |
101 |
tagcatgccaaacaatatctgctgtgtggttgttgagtatcttcctggaggtgcactgaaatcattcttaatcaaaaataggaggaggaagttagctttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35191044 |
tagcatgccaaacaatatctgctgtgtggttgttgagtatcttcctggaggtgcattgaaatcattcttaatcaaaaataggaggaggaagttagctttt |
35191143 |
T |
|
| Q |
201 |
aaggttgtcatccagctggcacttgatatggcaagagggtattcatcttccttttcttttcctgaatttttcactcaatgtaatagtgatttagtacttg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35191144 |
aaggttgtcatccagctggcacttgatatggcaagagggtattcatcttccttttcttttcctgaattttttactcaatgtaatagtgatttagtacttg |
35191243 |
T |
|
| Q |
301 |
tcgagaataaagaccgactcataatatgtttcgatcgctcaaatagaattcacttggatatgcagtctgaactatcttcactctcagaagattgtccaca |
400 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35191244 |
tcgagaataaagaccgactcataacatgtttcgatcgctcaaatagaattcacttggatatgcagtctgaactatcttcactctcagaagattgtccaca |
35191343 |
T |
|
| Q |
401 |
gagatgtaaagacagagaacatgctgttggataagtctcgcaccgttaaaattgctgattttggcgttgcacgtattgaagcgtcgaatcctaatgacat |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35191344 |
gagatgtaaagacagagaacatgctgttggataagtctcgcaccgttaaaattgctgattttggcgttgcacgtattgaagcgtcgaatccaaatgacat |
35191443 |
T |
|
| Q |
501 |
gaccggggagactggtacacttggttacatggctcctgaggtttgtagtcagtttcccttgaaacctttaccataaaatattgtgccaatatgaaaagaa |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
35191444 |
gaccggggagactggtacacttggttacatggctcctgaggtttgtagtcagtttcccttgaaacctttaacataaaatattgtgccgatatgaaaagaa |
35191543 |
T |
|
| Q |
601 |
aaaggtcacaaaagggctttcatttgatcaaaaagaaagtctaagcaattgacttgtaacttatttgataaatgggtgaatgatggtttacaggttttaa |
700 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35191544 |
aaaggtcacaaaagggctttcatttgatcaaaaagaaagtctaagcaattgacttttaacttatttgataaatgggtgaatgatggtttacaggttttaa |
35191643 |
T |
|
| Q |
701 |
atggcaacccctataacaggaaatgtgatgtatatagttttggcatatgtttatgggaaatatatt |
766 |
Q |
| |
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| T |
35191644 |
atggcaacccctataacaggaaatgtgatgtatatagttttggcatatgtttatgggaaatatatt |
35191709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 7e-45; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 373 - 549
Target Start/End: Original strand, 43974249 - 43974425
Alignment:
| Q |
373 |
tatcttcactctcagaagattgtccacagagatgtaaagacagagaacatgctgttggataagtctcgcaccgttaaaattgctgattttggcgttgcac |
472 |
Q |
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||||||||||||||||||||||| ||||||||||| ||||| || ||||||||| |||||||| | ||||| |||||||||||||||||||| ||||||| |
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| T |
43974249 |
tatcttcactctcagaagattgttcacagagatgtgaagaccgaaaacatgctgctggataagacccgcacagttaaaattgctgattttggggttgcac |
43974348 |
T |
|
| Q |
473 |
gtattgaagcgtcgaatcctaatgacatgaccggggagactggtacacttggttacatggctcctgaggtttgtagt |
549 |
Q |
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| | || ||||| ||||||||||| |||||||||||||| || || |||||||| |||||||| ||||| |||||| |
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| T |
43974349 |
gagtcgaggcgtcaaatcctaatgatatgaccggggagaccggaacccttggttatatggctccagaggtgtgtagt |
43974425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 35 - 241
Target Start/End: Original strand, 43973953 - 43974159
Alignment:
| Q |
35 |
tgtttagtttataggggcaacaatggggtcatctgaattacagatacaaactgacagtggtctaattagcatgccaaacaatatctgctgtgtggttgtt |
134 |
Q |
| |
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|||||||||||| || ||||| ||||| || | ||||| ||||| |||||||| | |||||||||| ||||||||| ||||||||| ||||| ||||| |
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| T |
43973953 |
tgtttagtttattggagcaactatgggatctgcagaattgcagattcaaactgatactggtctaattggcatgccaagcaatatctgttgtgttgttgtg |
43974052 |
T |
|
| Q |
135 |
gagtatcttcctggaggtgcactgaaatcattcttaatcaaaaataggaggaggaagttagcttttaaggttgtcatccagctggcacttgatatggcaa |
234 |
Q |
| |
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||||||||| |||||||| |||||||||||| | |||| || || ||||||||||| |||||||||||||||||||| ||||||| |||||| | |||| |
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| T |
43974053 |
gagtatcttgctggaggtacactgaaatcatacctaataaagaacaggaggaggaaattagcttttaaggttgtcatacagctggtgcttgatttagcaa |
43974152 |
T |
|
| Q |
235 |
gagggta |
241 |
Q |
| |
|
||||||| |
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|
| T |
43974153 |
gagggta |
43974159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 688 - 758
Target Start/End: Original strand, 43975038 - 43975108
Alignment:
| Q |
688 |
ttacaggttttaaatggcaacccctataacaggaaatgtgatgtatatagttttggcatatgtttatggga |
758 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||| || |||||||| || ||||||||||| |
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| T |
43975038 |
ttacaggttttaaatggaaacccctataacaggaaatgtgatgtgtacagttttggtatctgtttatggga |
43975108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 386 - 542
Target Start/End: Original strand, 1666412 - 1666568
Alignment:
| Q |
386 |
agaagattgtccacagagatgtaaagacagagaacatgctgttggataagtctcgcaccgttaaaattgctgattttggcgttgcacgtattgaagcgtc |
485 |
Q |
| |
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|||||||||||||||||||||| || ||||| |||||||| | || ||| | || || | ||||| ||||||||||| || || ||||| ||||| || |
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| T |
1666412 |
agaagattgtccacagagatgttaaaacagaaaacatgcttctagacaagacacgaacgttgaaaatcgctgattttggtgtagctcgtatcgaagcttc |
1666511 |
T |
|
| Q |
486 |
gaatcctaatgacatgaccggggagactggtacacttggttacatggctcctgaggt |
542 |
Q |
| |
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||||||| |||||||||| || || ||||| || ||||||||||||||||||||||| |
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| T |
1666512 |
gaatcctcatgacatgactggtgaaactggaacccttggttacatggctcctgaggt |
1666568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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