View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19358_low_31 (Length: 439)
Name: NF19358_low_31
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_31 |
 | |
|
| [»] scaffold0094 (1 HSPs) |
| | |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 21 - 378
Target Start/End: Complemental strand, 38176549 - 38176193
Alignment:
| Q |
21 |
gtcctcctcctcaagaagcggaagcagttggattacgcgatgccattttgtggcttggacagttagaattatcaaatgtgcaattagaactagattgtaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38176549 |
gtcctcctcctcaagaagcggaagcagttggattacgcgatgccattttgtggcttggacagttagaattatcaaatgtgcaattagaactagattgtaa |
38176450 |
T |
|
| Q |
121 |
actagtggtggatagcatatatgataagaataacaaccaggcagaatttggtagtatcattgatgactgcaggtcactattacaacaatttacaaacttt |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38176449 |
actagtggtggatagcatatatgataagaataacaaccaggcagaatttggtagtatcattgatgactgcaggtcactattacaacaatttacaaacttt |
38176350 |
T |
|
| Q |
221 |
aagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtctttgatttgattcca |
320 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38176349 |
aag-ataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtctttgatttgattcca |
38176251 |
T |
|
| Q |
321 |
tcttgtattccaaattgtgtgatgaatgaaatgatatgagtttttgttggtcaaaaaa |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38176250 |
tcttgtattccaaattgtgtgatgaatgaaatgatatgagtttttgttggtcaaaaaa |
38176193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 105 - 378
Target Start/End: Original strand, 42415154 - 42415426
Alignment:
| Q |
105 |
tagaactagattgtaaactagtggtggatagcatatatgataagaataacaaccaggcagaatttggtagtatcattgatgactgcaggtcactattaca |
204 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| | ||||| ||||| ||| || || || |||||||||||||| || || |||| | ||| | |
|
|
| T |
42415154 |
tagaactagattgcaaactagtggttgatagcatttttgataggaatagcaatcaagcggagtttggtagtatcatatccgaatgtcggtcgcgtttaaa |
42415253 |
T |
|
| Q |
205 |
acaatttacaaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagt |
304 |
Q |
| |
|
||| | | ||||||||| || |||||||||||||||||||||| ||| |||||||||||| || ||||||| ||| | ||| | ||||||||||| | |
|
|
| T |
42415254 |
acattatccaaactttagga-taagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccagga |
42415352 |
T |
|
| Q |
305 |
ctttgatttgattccatcttgtattccaaattgtgtgatgaatgaaatgatatgagtttttgttggtcaaaaaa |
378 |
Q |
| |
|
||||||||||||||||| | |||| || | ||||| |||||||| ||||||||||||||| ||||||||| |
|
|
| T |
42415353 |
gtttgatttgattccatcatatattgaaactattgtgagaaatgaaataatatgagtttttgtttgtcaaaaaa |
42415426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 264
Target Start/End: Original strand, 41192337 - 41192572
Alignment:
| Q |
28 |
tcctcaagaagcggaagcagttggattacgcgatgccattttgtggcttggacagttagaattatcaaatgtgcaattagaactagattgtaaactagtg |
127 |
Q |
| |
|
|||| |||||| |||||||| || ||| | ||| | |||||||||| |||||||| | ||||||| | |||| | ||||||||||||||||| ||| |
|
|
| T |
41192337 |
tccttaagaaggtgaagcagtgggtttatgtgatactattttgtggcatggacagtcgggattatcataaatgcacattgaactagattgtaaacttgtg |
41192436 |
T |
|
| Q |
128 |
gtggatagcatatatgataagaataacaaccaggcagaatttggtagtatcattgatgactgcaggtcactattacaacaatttacaaactttaagaata |
227 |
Q |
| |
|
| || |||||||||||||||||| | || || || ||| ||| | |||||| | || || | |||||| |||||||||| |||||||||||| || |
|
|
| T |
41192437 |
attgagagcatatatgataagaatgataatcaagccgaacttgccaatatcatagttggttgtacgtcacttttacaacaatccacaaactttaag-atg |
41192535 |
T |
|
| Q |
228 |
agttttgttaggagacaagcgaatgttgtcgctcata |
264 |
Q |
| |
|
| |||||| ||||||||| | |||||||||| ||||| |
|
|
| T |
41192536 |
aattttgtcaggagacaaacaaatgttgtcggtcata |
41192572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 10486621 - 10486572
Alignment:
| Q |
197 |
ctattacaacaatttacaaactttaagaataagttttgttaggagacaagc |
247 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10486621 |
ctattacaacaattttcaaactttaag-ataagttttgttaggagacaagc |
10486572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 213 - 378
Target Start/End: Complemental strand, 8178144 - 8177980
Alignment:
| Q |
213 |
caaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtctttgatt |
312 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||| ||| |||| || |||| || ||||||| ||||| ||| | ||| ||| ||| || ||||||| |
|
|
| T |
8178144 |
caaactttaaga-taagttttgctaggagacaagcaaattttgttgcccatacattagctagggagtcaaaattgtatgctagtcgccacgtttttgatt |
8178046 |
T |
|
| Q |
313 |
tgattccatcttgtattccaaattgtgtgatgaatgaaatgatatgagtttttgttggtcaaaaaa |
378 |
Q |
| |
|
|||||||||||||||| | | | | | ||||| |||| |||| ||||| |||||||||||||| |
|
|
| T |
8178045 |
ggattccatcttgtattacgactactattatgaacgaaagaatataagtttctgttggtcaaaaaa |
8177980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 200 - 329
Target Start/End: Complemental strand, 38195695 - 38195567
Alignment:
| Q |
200 |
ttacaacaatttacaaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcac |
299 |
Q |
| |
|
|||||||| ||| |||||||||||| ||||||| | |||||||||| ||| ||||||||||||||| ||| ||| | ||| || || ||| ||||| |
|
|
| T |
38195695 |
ttacaacactttccaaactttaaga-taagtttcatctggagacaagcaaattatgtcgctcatagtttagctcgggcgacaaagttgcatgctagtcac |
38195597 |
T |
|
| Q |
300 |
caagtctttgatttgattccatcttgtatt |
329 |
Q |
| |
|
||||| || |||||||||||||||||||| |
|
|
| T |
38195596 |
caagtgttcaatttgattccatcttgtatt |
38195567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 120
Target Start/End: Complemental strand, 5572460 - 5572393
Alignment:
| Q |
53 |
ttacgcgatgccattttgtggcttggacagttagaattatcaaatgtgcaattagaactagattgtaa |
120 |
Q |
| |
|
|||||| |||||||| | ||||||||||| || | | ||||||||||||| || |||||||||||||| |
|
|
| T |
5572460 |
ttacgcaatgccattatttggcttggacatttgggactatcaaatgtgcattttgaactagattgtaa |
5572393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 21 - 378
Target Start/End: Original strand, 1527072 - 1527428
Alignment:
| Q |
21 |
gtcctcctcctcaagaagcggaagcagttggattacgcgatgccattttgtggcttggacagttagaattatcaaatgtgcaattagaactagattgtaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1527072 |
gtcctcctcctcaagaagcggaagcagttggattacgcgatgccattttgtggcttggacagttagaattatcaaatgtgcaattagaactagattgtaa |
1527171 |
T |
|
| Q |
121 |
actagtggtggatagcatatatgataagaataacaaccaggcagaatttggtagtatcattgatgactgcaggtcactattacaacaatttacaaacttt |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1527172 |
actagtggtggatagcatatatgataagaataacaaccaggcagaatttggtagtatcattgatgactgcaggtcactattacaacaatttacaaacttt |
1527271 |
T |
|
| Q |
221 |
aagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtctttgatttgattcca |
320 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1527272 |
aag-ataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtctttgatttgattcca |
1527370 |
T |
|
| Q |
321 |
tcttgtattccaaattgtgtgatgaatgaaatgatatgagtttttgttggtcaaaaaa |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
1527371 |
tcttgtattccaaattgtgtgatgaatgaaatgatatgagttttttgttgtcaaaaaa |
1527428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 183 - 378
Target Start/End: Complemental strand, 48799180 - 48798988
Alignment:
| Q |
183 |
atgactgcaggtcactattacaacaatttacaaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaa |
282 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
48799180 |
atgactgcaagtcactattacaacaatttacaaactttaagaa-aagtttcgttagatgacaagcgaatgttgtcgcttatagtttcgttagggtgtcaa |
48799082 |
T |
|
| Q |
283 |
tatttcaagctcgtcaccaagtctttgatttgattccatcttgtattccaaattgtgtgatgaatgaaatgatatgagtttttgttggtcaaaaaa |
378 |
Q |
| |
|
|||| |||| | ||| |||| ||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
48799081 |
tattacaagttggtcgccaaatctatgatttgattccatcttgtatttcaaattgtgtgatgaatgaaatg--atgagtttttgttggtaaaaaaa |
48798988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 105 - 378
Target Start/End: Original strand, 53920179 - 53920454
Alignment:
| Q |
105 |
tagaactagattgtaaactagtggtggatagcatatatgataagaataacaac---caggcagaatttggtagtatcattgatgactgcaggtcactatt |
201 |
Q |
| |
|
||||||| ||||| ||||||||| | |||||||| | ||||| ||||| || | || || || ||||||||| |||| ||| ||| |||| || || |
|
|
| T |
53920179 |
tagaactggattgcaaactagtgtttgatagcatttttgataggaatagcagcaatcaagcggagtttggtagtctcatatctgaatgccggtcgctttt |
53920278 |
T |
|
| Q |
202 |
acaacaatttacaaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcacca |
301 |
Q |
| |
|
| |||| | | |||||||||||| | ||||||||||| |||||||| ||| |||||||||||| || ||||||| ||| | ||| | ||||||||||| |
|
|
| T |
53920279 |
aaaacattatccaaactttaaga-tgagttttgttagaagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcacca |
53920377 |
T |
|
| Q |
302 |
agtctttgatttgattccatcttgtattccaaattgtgtgatgaatgaaatgatatgagtttttgttggtcaaaaaa |
378 |
Q |
| |
|
|| |||| ||||||||||||||||||| || | ||||| |||||||| | ||||||||||||| ||||||||| |
|
|
| T |
53920378 |
agagtttgttttgattccatcttgtattgaaactattgtgagaaatgaaataacatgagtttttgtttgtcaaaaaa |
53920454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 213 - 362
Target Start/End: Original strand, 25500951 - 25501099
Alignment:
| Q |
213 |
caaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtctttgatt |
312 |
Q |
| |
|
|||||||||||| ||| || ||| ||||||||||| ||| |||||| |||||||| || |||| |||| ||| | |||||||||| ||||||| ||| |
|
|
| T |
25500951 |
caaactttaaga-taaattatgtaaggagacaagcaaattgtgtcgcccatagtttagcaagggcatcaaaattgtatgctcgtcaccgagtctttcatt |
25501049 |
T |
|
| Q |
313 |
tgattccatcttgtattccaaattgtgtgatgaatgaaatgatatgagtt |
362 |
Q |
| |
|
||||||||||||||||| || | ||||||||||||||| |||| |||| |
|
|
| T |
25501050 |
tgattccatcttgtattgaaactattgtgatgaatgaaataatataagtt |
25501099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 329
Target Start/End: Original strand, 1930111 - 1930226
Alignment:
| Q |
213 |
caaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtctttgatt |
312 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| | || ||| |||| |||||| ||| || ||| ||||| ||| || |||||||||||| ||||||| |
|
|
| T |
1930111 |
caaactttaa-aataagttttgctaggagaaatgctaattatgtcactcatactttagcaggggcgtcaagattacatgctcgtcaccaacagtttgatt |
1930209 |
T |
|
| Q |
313 |
tgattccatcttgtatt |
329 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
1930210 |
tgattccatcttgtatt |
1930226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 378
Target Start/End: Complemental strand, 50509547 - 50509460
Alignment:
| Q |
291 |
gctcgtcaccaagtctttgatttgattccatcttgtattccaaattgtgtgatgaatgaaatgatatgagtttttgttggtcaaaaaa |
378 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| | | ||||||||||||||| |||| |||| || ||||| |||||| |
|
|
| T |
50509547 |
gctcgtcaccacatctttgatttgattccatcttgtattacctctattgtgatgaatgaaataatataagttatttttggtaaaaaaa |
50509460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 21 - 378
Target Start/End: Complemental strand, 4319028 - 4318673
Alignment:
| Q |
21 |
gtcctcctcctcaagaagcggaagcagttggattacgcgatgccattttgtggcttggacagttagaattatcaaatgtgcaattagaactagattgtaa |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4319028 |
gtcctcctcctcaagaagcggaagcagttggattacgcgatgccattttgtggcttggacagttaaaattatcaaatgtgcaattagaactagattgtaa |
4318929 |
T |
|
| Q |
121 |
actagtggtggatagcatatatgataagaataacaaccaggcagaatttggtagtatcattgatgactgcaggtcactattacaacaatttacaaacttt |
220 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4318928 |
actagtgttg-atagcatatatgataagaataacaaccaggcagaatttggtagtatcattgatgactgcaggtcactattacaaaaatttacaaacttt |
4318830 |
T |
|
| Q |
221 |
aagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtctttgatttgattcca |
320 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4318829 |
aaga-taagttttgttaggagacaagtaaatgttgtcgctcatagtttcgctagggtgtcaatattacaagctcgtcaccaagtctttgatttgattcca |
4318731 |
T |
|
| Q |
321 |
tcttgtattccaaattgtgtgatgaatgaaatgatatgagtttttgttggtcaaaaaa |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4318730 |
tcttgtattccaaattgtgtgatgaatgaaatgatatgagtttttgttggtcaaaaaa |
4318673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 26 - 378
Target Start/End: Complemental strand, 28626658 - 28626307
Alignment:
| Q |
26 |
cctcctcaagaagcggaagcagttggattacgcgatgccattttgtggcttggacagttagaattatcaaatgtgcaattagaactagattgtaaactag |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
28626658 |
cctcctcaagaagcggaagcagttggattacgtgatgccattttgtggcttggatagttagaattatcaaatgtgctaatagaactagattgtaaactag |
28626559 |
T |
|
| Q |
126 |
tggtggatagcatatatgataagaataacaaccaggcagaatttggtagtatcattgatgactgcaggtcactattacaacaatttacaaactttaagaa |
225 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||| | |
|
|
| T |
28626558 |
tggttgatagcatatatgataagaataactaccaggaagaatttggtagtatcatcaatgactgcaggtaactattacaacaatgtacaaactttaag-a |
28626460 |
T |
|
| Q |
226 |
taagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtctttgatttgattccatcttg |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
28626459 |
taagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctaaggtgtcaatattacaagctcgtcaccaagtctttgatttgattccattttg |
28626360 |
T |
|
| Q |
326 |
tattccaaattgtgtgatgaatgaaatgatatgagtttttgttggtcaaaaaa |
378 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
28626359 |
tattccaaattgtgtgatgaatgaaatggtatgagtttttgttggtaaaaaaa |
28626307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 73 - 378
Target Start/End: Original strand, 6409453 - 6409757
Alignment:
| Q |
73 |
gcttggacagttagaattatcaaatgtgcaattagaactagattgtaaactagtggtggatagcatatatgataagaataacaaccaggcagaatttggt |
172 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6409453 |
gcttggacagttagaattatcaaatgtgaaaatagaactagattgtaaactagtggttgatagtatatatgataagaataacaaccaggtagaatttggt |
6409552 |
T |
|
| Q |
173 |
agtatcattgatgactgcaggtcactattacaacaatttacaaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgct |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||| ||||||||| |||||||||| |
|
|
| T |
6409553 |
agtatcattgatgactgcaggtcactattacaacaatttacaaattttaag-ataagttttgttaggagagaagcgaatattgtcgctcgtagtttcgct |
6409651 |
T |
|
| Q |
273 |
agggtgtcaatatttcaagctcgtcaccaagtctttgatttgattccatcttgtattccaaattgtgtgatgaatgaaatgatatgagtttttgttggtc |
372 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6409652 |
agagtgtcaatattacaagctcgtcaccaagtctttaatttgattccatcttaaattccaaattgtgtgatgaatgaaatgatatgagtttttgttggtc |
6409751 |
T |
|
| Q |
373 |
aaaaaa |
378 |
Q |
| |
|
|||||| |
|
|
| T |
6409752 |
aaaaaa |
6409757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 22 - 378
Target Start/End: Original strand, 34212576 - 34212931
Alignment:
| Q |
22 |
tcctcctcctcaagaagcggaagcagttggattacgcgatgccattttgtggcttggacagttagaattatcaaatgtgcaattagaactagattgtaaa |
121 |
Q |
| |
|
||||| |||||||||||| ||||| || || ||||| |||| |||||||||||||||||||| | ||||| ||||||| | |||||||||||||| |
|
|
| T |
34212576 |
tcctcttcctcaagaagctgaagcggtgggtttacgtgatgttattttgtggcttggacagttgggattattggatgtgcacattgaactagattgtaag |
34212675 |
T |
|
| Q |
122 |
ctagtggtggatagcatatatgataagaataacaaccaggcagaatttggtagtatcattgatgactgcaggtcactattacaacaatttacaaacttta |
221 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| ||||| | |||||||| | |||||| | ||| || | |||||| ||||||||||| |||||||||| |
|
|
| T |
34212676 |
ctagtggttgatagcatatgtgataagaataataaccaaaccgaatttggcaatatcatagctgattgtatgtcacttttacaacaattcacaaacttta |
34212775 |
T |
|
| Q |
222 |
agaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtctttgatttgattccat |
321 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||||||| |||| || || || ||||||||||| || | || |||||| ||||||||||||||||||| |
|
|
| T |
34212776 |
ag-ataaattttgttaggagacaagcgaatgttgtcgcttatagcttagcaagagtgtcaatattacatgttcctcaccatgtctttgatttgattccat |
34212874 |
T |
|
| Q |
322 |
cttgtattccaaattgtgtgatgaatgaaatgatatgagtttttgttggtcaaaaaa |
378 |
Q |
| |
|
||| |||| |||| || |||||||||||| |||||||||| || | ||||||||| |
|
|
| T |
34212875 |
cttatattacaaaccttgcgatgaatgaaataatatgagtttatggttgtcaaaaaa |
34212931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 22 - 208
Target Start/End: Complemental strand, 18977494 - 18977308
Alignment:
| Q |
22 |
tcctcctcctcaagaagcggaagcagttggattacgcgatgccattttgtggcttggacagttagaattatcaaatgtgca-attagaactagattgtaa |
120 |
Q |
| |
|
||||| |||||||||||| ||||| || || ||||| ||||| |||||||||||||||||||| | ||||| ||||||| |||| ||||||||||||| |
|
|
| T |
18977494 |
tcctcttcctcaagaagctgaagcggtgggtttacgtgatgctattttgtggcttggacagttgggattattggatgtgcacatta-aactagattgtaa |
18977396 |
T |
|
| Q |
121 |
actagtggtggatagcatatatgataagaataacaaccaggcagaatttggtagtatcattgatgactgcaggtcactattacaacaa |
208 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| ||||| || |||||||| | ||||| | |||||| | |||||| ||||||||| |
|
|
| T |
18977395 |
gctagtggttgatagcatatgtgataagaataataaccaagccgaatttggcaatatcaaagctgactgtatgtcacttttacaacaa |
18977308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 213 - 378
Target Start/End: Complemental strand, 31015560 - 31015396
Alignment:
| Q |
213 |
caaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtctttgatt |
312 |
Q |
| |
|
|||||||||||| ||| |||||||||||| ||||| ||| ||||| | ||||| || || | ||||||| | | || |||||||||||||| ||||||| |
|
|
| T |
31015560 |
caaactttaaga-taaattttgttaggaggcaagcaaattttgtcacccatagcttagcaaaggtgtcacgaatgcatgctcgtcaccaagtgtttgatt |
31015462 |
T |
|
| Q |
313 |
tgattccatcttgtattccaaattgtgtgatgaatgaaatgatatgagtttttgttggtcaaaaaa |
378 |
Q |
| |
|
||||||||||||||||| || ||||| |||||||| ||||||||||||||| || |||||| |
|
|
| T |
31015461 |
tgattccatcttgtattgactatattgtgagaaatgaaataatatgagtttttgtttgtaaaaaaa |
31015396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 329
Target Start/End: Complemental strand, 35581520 - 35581408
Alignment:
| Q |
215 |
aactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtctttgatttg |
314 |
Q |
| |
|
|||||||||| ||||||||||||| |||||| | ||| |||||||||||| | | || |||||||||| ||| | || ||||| || | ||||||||| |
|
|
| T |
35581520 |
aactttaaga-taagttttgttagaagacaaactaatattgtcgctcatactct-gcaagggtgtcaagattgtatcctagtcactaaatttttgatttg |
35581423 |
T |
|
| Q |
315 |
attccatcttgtatt |
329 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
35581422 |
attccatcttatatt |
35581408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 145; Significance: 4e-76; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 22 - 378
Target Start/End: Complemental strand, 22497951 - 22497596
Alignment:
| Q |
22 |
tcctcctcctcaagaagcggaagcagttggattacgcgatgccattttgtggcttggacagttagaattatcaaatgtgcaattagaactagattgtaaa |
121 |
Q |
| |
|
||||| |||||||||||| ||||| || || ||||| ||||| ||||||||||||||| |||| | |||||| ||||||| | |||||||||||||| |
|
|
| T |
22497951 |
tcctcttcctcaagaagctgaagcggtgggtttacgtgatgctattttgtggcttggagagttgggattatcggatgtgcacattgaactagattgtaag |
22497852 |
T |
|
| Q |
122 |
ctagtggtggatagcatatatgataagaataacaaccaggcagaatttggtagtatcattgatgactgcaggtcactattacaacaatttacaaacttta |
221 |
Q |
| |
|
||||||| |||||||||| |||||||||||| ||||| || |||||||| | |||||| | | | || | |||||| || |||||||| |||||||||| |
|
|
| T |
22497851 |
atagtggttgatagcatatgtgataagaataataaccaagccgaatttggcaatatcatagctaattgtatgtcacttttgcaacaattcacaaacttta |
22497752 |
T |
|
| Q |
222 |
agaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtctttgatttgattccat |
321 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| |||||| || || |||||||||||||| || |||||||||| ||||||||||||||||| | |
|
|
| T |
22497751 |
aga-taagttttgttaggagacaagcgaatgttgtcactcataacttagcaagggtgtcaatattacatgctcgtcaccgtgtctttgatttgattcctt |
22497653 |
T |
|
| Q |
322 |
cttgtattccaaattgtgtgatgaatgaaatgatatgagtttttgttggtcaaaaaa |
378 |
Q |
| |
|
|||||||| |||| || |||||||||||| |||||||||| |||| ||||||||| |
|
|
| T |
22497652 |
cttgtattacaaaccttgcgatgaatgaaataatatgagtttatgtttgtcaaaaaa |
22497596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 213 - 329
Target Start/End: Original strand, 12186853 - 12186968
Alignment:
| Q |
213 |
caaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtctttgatt |
312 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||| ||||| ||||| || || | ||||||| | || |||||||||||||| ||||||| |
|
|
| T |
12186853 |
caaactttaaga-taagttttgttaggaggcaagcgaattccgtcgcccatagcttagcaaaggtgtcacggatgcatgctcgtcaccaagtgtttgatt |
12186951 |
T |
|
| Q |
313 |
tgattccatcttgtatt |
329 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
12186952 |
tgattccatcttgtatt |
12186968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 355
Target Start/End: Original strand, 41732460 - 41732540
Alignment:
| Q |
275 |
ggtgtcaatatttcaagctcgtcaccaagtctttgatttgattccatcttgtattccaaattgtgtgatgaatgaaatgat |
355 |
Q |
| |
|
|||||||| ||| || |||||||| ||||| |||||||||||| ||||||||||| |||| | ||||||||||||||| |
|
|
| T |
41732460 |
ggtgtcaagattgcatgctcgtcatcaagtttttgatttgatttcatcttgtattacaaacattacgatgaatgaaatgat |
41732540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 9178931 - 9178875
Alignment:
| Q |
194 |
tcactattacaacaatttacaaactttaagaataagttttgttaggagacaagcgaat |
251 |
Q |
| |
|
||||| |||||| ||||| ||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
9178931 |
tcacttttacaataatttttaaactttaa-aataagttttgttaagagacaagcgaat |
9178875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 140; Significance: 4e-73; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 27 - 334
Target Start/End: Complemental strand, 8618620 - 8618314
Alignment:
| Q |
27 |
ctcctcaagaagcggaagcagttggattacgcgatgccattttgtggcttggacagttagaattatcaaatgtgcaattagaactagattgtaaactagt |
126 |
Q |
| |
|
||||||||||||| ||||| | || ||||| ||||| ||||| |||||||||||||| | ||||||| ||||||| | |||||||||||||| ||||| |
|
|
| T |
8618620 |
ctcctcaagaagctgaagcgctgggtttacgtgatgctattttatggcttggacagttgggattatcagatgtgcacatcgaactagattgtaagctagt |
8618521 |
T |
|
| Q |
127 |
ggtggatagcatatatgataagaataacaaccaggcagaatttggtagtatcattgatgactgcaggtcactattacaacaatttacaaactttaagaat |
226 |
Q |
| |
|
||| |||||||||| |||||||||||| ||||| || ||||||| | |||||| | ||| || |||||||| ||||||||||| |||||||| ||| || |
|
|
| T |
8618520 |
ggttgatagcatatgtgataagaataataaccaagccaaatttggcaatatcatagctgattgtaggtcacttttacaacaattcacaaacttcaag-at |
8618422 |
T |
|
| Q |
227 |
aagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtctttgatttgattccatcttgt |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || || |||||||||||||| || |||||||||| |||| |||||||||||||||||| |
|
|
| T |
8618421 |
aagttttgttaggagacaagcgaatgttgtcgctcatagcttagcaagggtgtcaatattacatcctcgtcaccatttcttcgatttgattccatcttgt |
8618322 |
T |
|
| Q |
327 |
attccaaa |
334 |
Q |
| |
|
||| |||| |
|
|
| T |
8618321 |
attacaaa |
8618314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 377 - 432
Target Start/End: Original strand, 31825894 - 31825949
Alignment:
| Q |
377 |
aaggactaattgtttcctcttattttcaggcttggcaggtcttgtatctacctatg |
432 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31825894 |
aaggactaattgtttcctcttattttcaggcttggcaggtcttgtatctacttatg |
31825949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 202 - 326
Target Start/End: Complemental strand, 31385905 - 31385782
Alignment:
| Q |
202 |
acaacaatttacaaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcacca |
301 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||| ||| ||||| |||||| ||| || |||||||||| ||| || ||| |||| || |
|
|
| T |
31385905 |
acaacaaaatacaaactttaagattaagttttgttaggagacaagctaattttgtcactcatactttagc-agggtgtcaaaattacatgcttgtcatca |
31385807 |
T |
|
| Q |
302 |
agtctttgatttgattccatcttgt |
326 |
Q |
| |
|
| ||||||||||||| ||||||| |
|
|
| T |
31385806 |
acagtttgatttgattctatcttgt |
31385782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 329
Target Start/End: Original strand, 3664954 - 3665010
Alignment:
| Q |
273 |
agggtgtcaatatttcaagctcgtcaccaagtctttgatttgattccatcttgtatt |
329 |
Q |
| |
|
|||||||||| ||| || |||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
3664954 |
agggtgtcaaaattacacgctcgtcaccaagtctttgatttgtttccattttgtatt |
3665010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 264
Target Start/End: Complemental strand, 2704084 - 2704027
Alignment:
| Q |
206 |
caatttacaaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcata |
264 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
2704084 |
caatttagaaactttaaga-taagttttgttaggagacaagcaaattatgtcgctcata |
2704027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 421
Target Start/End: Original strand, 34383553 - 34383591
Alignment:
| Q |
383 |
taattgtttcctcttattttcaggcttggcaggtcttgt |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
34383553 |
taattgtttcctcttattttcaggcttggcgggtcttgt |
34383591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 352
Target Start/End: Complemental strand, 15074461 - 15074323
Alignment:
| Q |
213 |
caaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtctttgatt |
312 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||| ||| ||||||||||||| | || ||| |||| ||| | |||||||| || ||||||||| |
|
|
| T |
15074461 |
caaactttaaga-taagttttgttagaagacaagcaaattgtgtcgctcatagtatagcaaggacatcaaaattgtatgctcgtcaacatatctttgatt |
15074363 |
T |
|
| Q |
313 |
tgattccatcttgtattccaaattgtgtgatgaatgaaat |
352 |
Q |
| |
|
|||||| || || |||| | | | ||||||||||||||| |
|
|
| T |
15074362 |
tgattctattttatatttctactattgtgatgaatgaaat |
15074323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 5e-72; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 30 - 363
Target Start/End: Original strand, 46342782 - 46343114
Alignment:
| Q |
30 |
ctcaagaagcggaagcagttggattacgcgatgccattttgtggcttggacagttagaattatcaaatgtgcaattagaactagattgtaaactagtggt |
129 |
Q |
| |
|
|||||||||| |||||||| |||| ||||||||| || |||||||||||||| |||| ||||| | ||||||| | |||||||||||||||| |||||| |
|
|
| T |
46342782 |
ctcaagaagctgaagcagtgggatcacgcgatgctatcttgtggcttggacaattaggattattagatgtgcacattgaactagattgtaaacaagtggt |
46342881 |
T |
|
| Q |
130 |
ggatagcatatatgataagaataacaaccaggcagaatttggtagtatcattgatgactgcaggtcactattacaacaatttacaaactttaagaataag |
229 |
Q |
| |
|
|||||||||| |||||||||||| ||||| || ||||||| | |||||| | ||| || |||||||| ||||||||||| ||||||| |||| ||||| |
|
|
| T |
46342882 |
tgatagcatatgtgataagaataataaccaagccgaatttgacaatatcatagttgattgtaggtcacttttacaacaattcacaaactctaag-ataag |
46342980 |
T |
|
| Q |
230 |
ttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtctttgatttgattccatcttgtatt |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || || ||| |||||||||| || | | ||||||| |||||||||||||| ||||||||||| |
|
|
| T |
46342981 |
ttttgttaggagacaagcgaatgttgtcgctcatatcttagcaaggatgtcaatattacatgttggtcaccatatctttgatttgatttcatcttgtatt |
46343080 |
T |
|
| Q |
330 |
ccaaattgtgtgatgaatgaaatgatatgagttt |
363 |
Q |
| |
|
|||| || ||||||||||| |||||||||| |
|
|
| T |
46343081 |
acaaaccttgctatgaatgaaataatatgagttt |
46343114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 53 - 378
Target Start/End: Complemental strand, 44586007 - 44585683
Alignment:
| Q |
53 |
ttacgcgatgccattttgtggcttggacagttagaattatcaaatgtgcaattagaactagattgtaaactagtggtggatagcatatatgataagaata |
152 |
Q |
| |
|
|||||| |||| |||||||||||| ||||||| | ||||||| ||||||| | ||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
44586007 |
ttacgcaatgctattttgtggctttgacagttgggattatcatatgtgcacattgaactagattgtaaactagtggttgatagcatatgtgataagaata |
44585908 |
T |
|
| Q |
153 |
acaaccaggcagaatttggtagtatcattgatgactgcaggtcactattacaacaatttacaaactttaagaataagttttgttaggagacaagcgaatg |
252 |
Q |
| |
|
| ||||| || ||||||| | |||||| ||| || |||||||| ||| ||| ||| |||||||||||| ||||||||||| |||||||| |||||| |
|
|
| T |
44585907 |
ataaccaagctgaatttgacaatatcatacttgattgtaggtcacttttataactattcacaaactttaag-ataagttttgtcaggagacagacgaatg |
44585809 |
T |
|
| Q |
253 |
ttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtctttgatttgattccatcttgtattccaaattgtgtgatgaatgaaat |
352 |
Q |
| |
|
||||||||||||| || || ||||||| || || || | | |||||||||| |||||||| |||||||| |||||| ||||| || |||||||||||| |
|
|
| T |
44585808 |
ttgtcgctcatagcttagcaagggtgttgatgttacatgtttgtcaccaagtttttgatttaattccatcatgtattacaaatcttgcgatgaatgaaat |
44585709 |
T |
|
| Q |
353 |
gatatgagtttttgttggtcaaaaaa |
378 |
Q |
| |
|
||| |||||| |||| ||||||||| |
|
|
| T |
44585708 |
aatacgagtttatgtttgtcaaaaaa |
44585683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 200 - 329
Target Start/End: Original strand, 4816695 - 4816823
Alignment:
| Q |
200 |
ttacaacaatttacaaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcac |
299 |
Q |
| |
|
|||||||| ||| |||||||||||| ||| || ||| ||||||||||| ||| |||||| ||||| || || |||| ||||| ||| | ||||||||| |
|
|
| T |
4816695 |
ttacaacattttccaaactttaaga-taaattatgtaaggagacaagcaaattatgtcgcccatagcttagcaagggagtcaaaattgtatgctcgtcac |
4816793 |
T |
|
| Q |
300 |
caagtctttgatttgattccatcttgtatt |
329 |
Q |
| |
|
|||||||||||||||||| |||||| |||| |
|
|
| T |
4816794 |
caagtctttgatttgatttcatcttatatt |
4816823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 282
Target Start/End: Complemental strand, 19023405 - 19023315
Alignment:
| Q |
191 |
aggtcactattacaacaatttacaaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaa |
282 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||| | ||| | || ||||||| || ||||||| ||||| |
|
|
| T |
19023405 |
aggtctctattacaacaattttcaaactttaag-ataagttttgttaggagacaaacaaattatatcactcatagcttagctagggagtcaa |
19023315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 378
Target Start/End: Original strand, 5299419 - 5299599
Alignment:
| Q |
197 |
ctattacaacaatttacaaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgt |
296 |
Q |
| |
|
|||| |||||||||| ||||||||||| |||| ||||||||| |||||||||||| ||||| ||| | || || |||| | ||| ||| |||||| |
|
|
| T |
5299419 |
ctataacaacaatttccaaactttaag-ataaattttgttagaagacaagcgaattcggtcgcccattgcttagcaagggaggcaaaattgtgtgctcgt |
5299517 |
T |
|
| Q |
297 |
caccaagtctttgatttgattccatcttgtattccaaattgtgtgatgaatgaaatgatatgagtttttgttggtcaaaaaa |
378 |
Q |
| |
|
||||| || || |||||||||||||||||||| | | | | | | |||| |||| ||||||||||||||| || |||||| |
|
|
| T |
5299518 |
caccacgttttcaatttgattccatcttgtattgctactattttaaggaataaaataatatgagtttttgtttgtaaaaaaa |
5299599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 235 - 378
Target Start/End: Complemental strand, 28909796 - 28909650
Alignment:
| Q |
235 |
ttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtctttgatttgattccatcttgtattccaaa |
334 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28909796 |
ttaggagacaagcgaatgttgtcactcatagtttcgctagggtgtcaatattacaagctcgtcaccaagtctttgatttgattccatcttgcattccaaa |
28909697 |
T |
|
| Q |
335 |
ttgtgtgatgaatgaaa---tgatatgagtttttgttggtcaaaaaa |
378 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
28909696 |
ttgtgtgatgaatgaaatgatgatatgagtttttgttggtaaaaaaa |
28909650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 200 - 329
Target Start/End: Complemental strand, 1101101 - 1100973
Alignment:
| Q |
200 |
ttacaacaatttacaaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcac |
299 |
Q |
| |
|
||||||||| | ||||||||||||| |||||||| |||||||||| | ||| |||||||||||| ||| | ||| ||||| ||| || ||||||||| |
|
|
| T |
1101101 |
ttacaacaacatccaaactttaagaa-aagttttgctaggagacaatcaaattttgtcgctcatactttagtaggggagtcaagattacatgctcgtcac |
1101003 |
T |
|
| Q |
300 |
caagtctttgatttgattccatcttgtatt |
329 |
Q |
| |
|
||| |||||||||||||||||||||||| |
|
|
| T |
1101002 |
caacagtttgatttgattccatcttgtatt |
1100973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 191 - 329
Target Start/End: Original strand, 29542182 - 29542319
Alignment:
| Q |
191 |
aggtcactattacaacaatttacaaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaa |
290 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||| ||| ||||||||||| |||||| ||| |||||| ||| | || ||||||| ||||| ||| | |
|
|
| T |
29542182 |
aggtctctattacaacaattttcaaactttaaga-taaattttgttaggatacaagcaaattatgtcgcccatggcttagctagggagtcaaaattgtac |
29542280 |
T |
|
| Q |
291 |
gctcgtcaccaagtctttgatttgattccatcttgtatt |
329 |
Q |
| |
|
||||||||||| || ||||||| |||||||||||||||| |
|
|
| T |
29542281 |
gctcgtcaccatgtttttgattcgattccatcttgtatt |
29542319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 213 - 367
Target Start/End: Original strand, 15223 - 15376
Alignment:
| Q |
213 |
caaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtctttgatt |
312 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||| |||||||||||| || ||||||| ||| | ||| | ||||||||||||| ||||||| |
|
|
| T |
15223 |
caaactttaaga-taagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatt |
15321 |
T |
|
| Q |
313 |
tgattccatcttgtattccaaattgtgtgatgaatgaaatgatatgagtttttgt |
367 |
Q |
| |
|
| ||||||| || |||| || | ||||| |||||||| |||||||||||||| |
|
|
| T |
15322 |
taattccattttatattgaaactattgtgagaaatgaaataatatgagtttttgt |
15376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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