View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_33 (Length: 433)
Name: NF19358_low_33
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 46 - 417
Target Start/End: Complemental strand, 52205858 - 52205489
Alignment:
| Q |
46 |
ccaaaagcacaaaagagaaaatcaaatacatgtacttgttgtttacattagaattgttatgatacaaacgggagaattgttctacgaatgcaacaaattt |
145 |
Q |
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|||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52205858 |
ccaaaagcacaacagagaaaatcaaatatatgtacttgttgtttacattagaa--gttatgatacaaacgggagaattgttctacgaatgcaacaaattt |
52205761 |
T |
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| Q |
146 |
actttcctagaactgtttaatgagacatattttgaaaaaatgtcgaatgaataaagacccacgttaaaatattacataaaagagaattatagtatcaatc |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52205760 |
actttcctagaactgtttaatgagacatattttgaaaaaatgtcgaatgaataaggacccacgttaaaatattacataaaagagaattatagtatcaatc |
52205661 |
T |
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| Q |
246 |
aagtgagttgtaaaatatattcttcaagcagatcaaaacaannnnnnnngggtcctgtaaatgtgaactttatagttacccttgcaagataacaaagaaa |
345 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52205660 |
aagtgagttgtaaaatatattcttcaagcagatcaaaacaattttttttgggtcctgtaaatgtgaactttatagttacccttgcaagataacagagaaa |
52205561 |
T |
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| Q |
346 |
ttactcctgcaacagagcaatacaaccatgattcttcgttacgatttctacgttcatagccctgaaaaatgt |
417 |
Q |
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| T |
52205560 |
ttaattctgcaacagagcaatacaaccatgattcttcgttacgatttctacgttcatagccctgaaaaatgt |
52205489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 50 - 417
Target Start/End: Complemental strand, 34309929 - 34309563
Alignment:
| Q |
50 |
aagcacaaaagagaaaatcaaatacatgtacttgttgtttacattagaattgttatgatacaaacgggagaattgttctacgaatgcaacaaatttactt |
149 |
Q |
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| T |
34309929 |
aagcacaacagagaaaatcaaatacatgtacttgct---tacattagaa--gttatgatacaaacgggagaattggtctacgaatgccacagatttactt |
34309835 |
T |
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| Q |
150 |
tcctagaactgtttaatgagacatattttgaaaaaatgtcgaatgaataaagacccac--gttaaaatattacataaaagagaattatagtatcaatcaa |
247 |
Q |
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||||||||||||| |||||||||||||||| |||||||||||| |||||| | ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34309834 |
tcctagaactgttcaatgagacatattttgcaaaaatgtcgaaagaataagggcccacacgttaaaatattacataaaagagaattatagtatcaatcaa |
34309735 |
T |
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| Q |
248 |
gtgagttgtaaaatatattcttcaagcagatcaaaacaannnnnnnngggtcctgtaaatgtgaactttatagttacccttgc--aagataacaaagaaa |
345 |
Q |
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|||||||||| |||||||||||||||||||||||||||| ||| || ||| ||| ||||| ||||| |||||||| ||||||||| ||||| |
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| T |
34309734 |
gtgagttgtacaatatattcttcaagcagatcaaaacaaatttttttcggttctataagtgtaaacttcatagtaacccttgcagaagataacagagaaa |
34309635 |
T |
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| Q |
346 |
ttactcctgcaacagagcaatacaaccatgattcttcgttacgatttctacgttcatagccctgaaaaatgt |
417 |
Q |
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||||||||| |||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
34309634 |
ttactcctgtaacaaagcaatacaaccatgatttttcgttacaatttctacgttcatagccctgaaaaatgt |
34309563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 46 - 121
Target Start/End: Original strand, 3191186 - 3191259
Alignment:
| Q |
46 |
ccaaaagcacaaaagagaaaatcaaatacatgtacttgttgtttacattagaattgttatgatacaaacgggagaa |
121 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||| |
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| T |
3191186 |
ccaaaagcacaacagagaaaatcaaatacatgtacttgttatttacattagaa--gttatgatacaaactggagaa |
3191259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 258 - 417
Target Start/End: Original strand, 3191270 - 3191422
Alignment:
| Q |
258 |
aaatatattcttcaagcagatcaaaacaannnnnnnngggtcctgtaaatgtgaactttatagttacccttgc--aagataacaaagaaattactcctgc |
355 |
Q |
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|||||||||||||||||||||||||||| || |||| ||||||||||||||||||| ||| |||| || |||||| |||||||||||||| |
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| T |
3191270 |
aaatatattcttcaagcagatcaaaacattttttttcgg-tcctataaatgtgaactttatagtaacctttgcagaaaataacactgaaattactcctgc |
3191368 |
T |
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| Q |
356 |
aacagagcaatacaaccatgattcttcgttacgatttctacgttcatagccctgaaaaatgt |
417 |
Q |
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|||| | ||||| ||| ||| |||| ||||||| ||||||||||||||||||||| |
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| T |
3191369 |
aacaaaacaata--------atttttcattacaatttctatgttcatagccctgaaaaatgt |
3191422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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