View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19358_low_35 (Length: 432)
Name: NF19358_low_35
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_35 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 186 - 360
Target Start/End: Original strand, 44857244 - 44857418
Alignment:
| Q |
186 |
agctttgaaacaatggatttgaaaatcccatttggactttgcaacaaagatgaatacttgctgttactgttgctgttgttggaatgatcaaagggaagga |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44857244 |
agctttgaaacaatggatttgaaaatcccatttggactttgcaacaaagatgaatacttgctgttactgttgctgttgttggaatgatcaaagggaagga |
44857343 |
T |
|
| Q |
286 |
taaagattttgtcacgagaatgtggtctgcatttgttgcatgaaacagaaccatcttctagttcagtttcagaac |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44857344 |
taaagattttgtcacgagaatgtggtctgcatttgttgcatgaaacagaaccatcttctagttcagtttcagaac |
44857418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 44857074 - 44857182
Alignment:
| Q |
16 |
actttttctctaactctgacattgaattcatgagccttgaagcttcttgaagagcttcatctctttttcttgtggcatgaacaagtttgtgagaaagttc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44857074 |
actttttctctaactctgacattgaattcatgagccttgaagcttcttgaagagcttcatctctttttcttgtggcatgaacaagtttgtgagaaagttc |
44857173 |
T |
|
| Q |
116 |
tgccactgc |
124 |
Q |
| |
|
||||||||| |
|
|
| T |
44857174 |
tgccactgc |
44857182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 186 - 295
Target Start/End: Original strand, 37221678 - 37221787
Alignment:
| Q |
186 |
agctttgaaacaatggatttgaaaatcccatttggactttgcaacaaagatgaatacttgctgttactgttgctgttgttggaatgatcaaagggaagga |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37221678 |
agctttgaaacaatggatttgaaaatcccatttggactttgcagcaaagatgaatacttgctgttactgttgctgttgttggaatgatcaaagggaagga |
37221777 |
T |
|
| Q |
286 |
taaagatttt |
295 |
Q |
| |
|
|||||||||| |
|
|
| T |
37221778 |
taaagatttt |
37221787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University