View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_36 (Length: 429)
Name: NF19358_low_36
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 17 - 424
Target Start/End: Complemental strand, 42291741 - 42291346
Alignment:
| Q |
17 |
agtaattgggtctagcatttccaagttgtggtgcattggtagcatacatagaggtataatagtttagtccaaggaaatcaaatgaccctttaagtagtct |
116 |
Q |
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| T |
42291741 |
agtaattgggtctaccatttccaagttgtggtgcattggtagcatacatagaggtataatagtttagtccaaggaaatcaaatgaccctttaagtagtct |
42291642 |
T |
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| Q |
117 |
tgcttccttttcagagaactctggcaatcgttttccaacaagagaacgcatgctttgtggatattccccttttgttagtggttccatatacctgtaatca |
216 |
Q |
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| T |
42291641 |
tgcttgctttttagagaaatttggcaatcgttttccaacaagagaacgcatgctttgtggatattccccttttgttagtggttccatatacctgtaatca |
42291542 |
T |
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| Q |
217 |
tttttacaaatagnnnnnnnnnnnntaatttcacgaacaattgttattgttgagaattactactatacgatatagtccaactaattatagaaacatggat |
316 |
Q |
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| T |
42291541 |
tttttacaaatagaaaacttaaaaacaatttcacgaacaattgttattgttgagaattactactatacgatatagtccaactaattatagaaacatggat |
42291442 |
T |
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| Q |
317 |
cggttttggaattggtattatgatgatttcaaatgatcgctttttattgtgatcattggagtaactaattaataacattttatggaaacttcttgttttg |
416 |
Q |
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| T |
42291441 |
cggttttggaattggtattatgatgatttcaaatgatcgctttttattgtgatca-tggag-----------taacattttatggaaacttcttgttttg |
42291354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 41 - 226
Target Start/End: Original strand, 42155540 - 42155725
Alignment:
| Q |
41 |
gttgtggtgcattggtagcatacatagaggtataatagtttagtccaaggaaatcaaatgaccctttaagtagtcttgcttccttttcagagaactctgg |
140 |
Q |
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| T |
42155540 |
gttgtggtgcattggtagcatacatagaggtataatagtttagtccaacgaaatcaaatgaccctttaagtagtcttgcttgctttttagagaactttgg |
42155639 |
T |
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| Q |
141 |
caatcgttttccaacaagagaacgcatgctttgtggatattccccttttgttagtggttccatatacctgtaatcatttttacaaa |
226 |
Q |
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| T |
42155640 |
caatcgttttccaacaagacaatgcatgctttgtgggtattttcccgttgttagtggttccataaacctgtaatcaatgttacaaa |
42155725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 26 - 229
Target Start/End: Original strand, 42165680 - 42165883
Alignment:
| Q |
26 |
gtctagcatttccaagttgtggtgcattggtagcatacatagaggtataatagtttagtccaaggaaatcaaatgaccctttaagtagtcttgcttcctt |
125 |
Q |
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| T |
42165680 |
gtctaccatttctaagttgcggtgcattagtagcatagttagaggtataatagtttagtccaaggaaatcaaatgaccctttaagtagtcttgcttgctt |
42165779 |
T |
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| Q |
126 |
ttcagagaactctggcaatcgttttccaacaagagaacgcatgctttgtggatattccccttttgttagtggttccatatacctgtaatcatttttacaa |
225 |
Q |
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| T |
42165780 |
tttagagaaatttggcaatcgttttccaacaagggaacgcatgctttttggatattttcccgttgttagtggttccatgaacctgtaatcattgttacaa |
42165879 |
T |
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| Q |
226 |
atag |
229 |
Q |
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|||| |
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| T |
42165880 |
atag |
42165883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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