View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_4 (Length: 734)
Name: NF19358_low_4
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 362 - 722
Target Start/End: Original strand, 27566255 - 27566617
Alignment:
| Q |
362 |
tgatcttgcttaccaacttcttgtgctattgtccatgttgttgaaaggattaggatagttgctagtaataatagatttggaaggaattttttgagtattt |
461 |
Q |
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| T |
27566255 |
tgatcttgcttaccaacttcttgtgctattgtccatgttgttgaaaggattaggatagttgctagtaataatagatttggaaggaatattttgagtattt |
27566354 |
T |
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| Q |
462 |
ttaggtgcttcatgtttgatgtggacttggaggaaagtttgaatgatgaaagtagaagatgatgaaagagggtgattatcttaatggaagagaaaaataa |
561 |
Q |
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| T |
27566355 |
tttggtgcttcatgtttgatttggacttggaggaaagtttgaatgatgaaagtagaagatgatgaaagagggtgattatcttaatggaagagaaaaataa |
27566454 |
T |
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| Q |
562 |
ggaagggtattttatagaagggttagtggtaat--aaacaatgcattaactcctatatgtaattgcaaagaaatttcttgtaatatttggtgtgtggaat |
659 |
Q |
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| T |
27566455 |
ggaagggtattttatagaagggttagtggtaataaaaaaaatgcattaactcctatatgtaattgcaaagaaagttcttgtaatatttggtgagtggaat |
27566554 |
T |
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| Q |
660 |
taggtaaaagtgtgaaactccctaggtaactcaaaattgaatttgaatcctttctgtcctttg |
722 |
Q |
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| T |
27566555 |
taggtaaaagtgtgaaactccctaggtaactcaaaattgaatttgaatcctttctgtcctttg |
27566617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 27565913 - 27566189
Alignment:
| Q |
18 |
cataatgatcaaatgaatgattttctgggttgattaaatacctcaatatcatgacctctatttttaatagtagcattgtggggtttatagtgcctcttta |
117 |
Q |
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| T |
27565913 |
cataatgatgaaatgaatgattttctgggttgattaaatacctcaatatcatgacctctatttttaatagtagcattgtggggtttatagtgcctcttta |
27566012 |
T |
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| Q |
118 |
attttcctaactttggcacaaccttcactctatggtttgacatatcaattggagattgcattttcccatcattacatgttgcccattccttcttgatttt |
217 |
Q |
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| T |
27566013 |
attttcctaactttggcacaaccttcactctatggcttgacatatcaattggagattgcattttcccatctttacatgttgcccattccttcttgatttt |
27566112 |
T |
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| Q |
218 |
accccaatgtgaggggcctattttgctaccttttgtgtaatcaaattcatgctcatcctctacacaaatatatagat |
294 |
Q |
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| T |
27566113 |
accccaatgtgaggggcctattttgctatcttttgtgtaatcaaattcatgctcatcctctacacaaatatatagat |
27566189 |
T |
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