View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19358_low_41 (Length: 420)
Name: NF19358_low_41
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_41 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 13 - 403
Target Start/End: Complemental strand, 46306301 - 46305910
Alignment:
| Q |
13 |
aaaattattgcttgataggtccctgacacataatagtgagtcgaatatgtttattaatattcagcatacagtgaaacttatcagtctagatatatgattt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46306301 |
aaaattattgcttgataggtccctgacacataatagtgagtcgaatatgtttattaatattcagcatacagtgaaacttatcagtctagatatatgattt |
46306202 |
T |
|
| Q |
113 |
catgaacttacaatgtatcaagattaatgatatgacccaactcgactggtatattccctttgaagttatttgcagaaaggttcctgtagat-nnnnnnnn |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46306201 |
catgaacttacaatgtatcaagattaatgatatgacccaactcgactggtatattccctttgaagttatttgcagaaaggttcctgtagataaaaaaaaa |
46306102 |
T |
|
| Q |
212 |
tacccgtgttattataagaattgtactaaaactaatgaaaaaatattaaatttgtcagaacgtacaagtaagtcagactctcaaggttgcgaaaggtcgt |
311 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
46306101 |
tacccatgttattataagaattgtactaaaactaatgaaaaaatattaaatttgtcagaacgtacaagtaagtcagactctcaagattgcgaaaggtcgt |
46306002 |
T |
|
| Q |
312 |
tggaatagaaccgcttaactgattaccatgcacattactgcaaaagaaaaccaaatgagtaagtaaacaatatgcatgccaaaattaaaact |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46306001 |
tggaatagaaccgcttaactgattaccatgcacattactgcaaaagaaaaccaaatgagtaagtaaacaatatgcatgccaaaattaaaact |
46305910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University