View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_43 (Length: 413)
Name: NF19358_low_43
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_43 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 16 - 413
Target Start/End: Original strand, 39233455 - 39233855
Alignment:
| Q |
16 |
atggattaatctaggtttatagtaatgcaagggcacttacaccagcccattctccaagggtctttgcatttggaacagtcaacaagctgacgctgtgttc |
115 |
Q |
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| T |
39233455 |
atggattaatctaggtttatagtaatgcaagggcacttacaccagcccattctccaagggtctttgcatttggaacagtcaacaagctgacgctgtgttc |
39233554 |
T |
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| Q |
116 |
agcacaaagggctttcaccaacttgacgtaatcaggttggtcacaatcctcagcaagaacacagagctgtgcagcatgcttctcgatcactttagcactt |
215 |
Q |
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| T |
39233555 |
agcacaaagggctttcaccaacttgacgtaatcaggttggtcacaatcctcagcaagaacacagagctgtgcagcatgcttctcgatcactttagcactt |
39233654 |
T |
|
| Q |
216 |
tcatgaagaccacgtgcaagtccaccatacgcacgagactttctcaacacaagctgaactgcggtcataatatccattggctctcctggaattccagctg |
315 |
Q |
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| T |
39233655 |
tcatgaagaccgcgtgcaagtccaccataagcacgagactttctcaacacaagctgaactgcggtcataatatccattggctctcctggaattccagctg |
39233754 |
T |
|
| Q |
316 |
cagcaacaactggctcagctacaacaact---tcttctctgaagaacgaaatgtttcataacagtcagaaaatcatcaagtaatctcttaaaacccctat |
412 |
Q |
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| T |
39233755 |
cagcaacaactggctcagctacaacaacttcctcttctctgaagaacgaaatgtttcataacagtcagaaaatcatcaagtaatctcttaaaacccctat |
39233854 |
T |
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| Q |
413 |
t |
413 |
Q |
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| T |
39233855 |
t |
39233855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 43 - 350
Target Start/End: Complemental strand, 3978289 - 3977985
Alignment:
| Q |
43 |
caagggcacttacaccagcccattctccaagggtctttgcatttggaacagtcaacaagctgacgctgtgttcagcacaaagggctttcaccaacttgac |
142 |
Q |
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| T |
3978289 |
caaggtcacttacaccagcccactctccaagtgtctttgcacttggaactgtcaacaagctaacattgtgctctgcgcagagggctttcaccaatttgac |
3978190 |
T |
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| Q |
143 |
gtaatcaggttggtcacaatcctcagcaagaacacagagctgtgcagcatgcttctcgatcactttagcactttcatgaagaccacgtgcaagtccacca |
242 |
Q |
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| T |
3978189 |
ataatcaggttggtcacaatcttcagctagaacacaaagctgtgcagcatgcttctcaatcacttttgcaccttcatgaagacctcgtgcaagaccacca |
3978090 |
T |
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| Q |
243 |
tacgcacgagactttctcaacacaagctgaactgcggtcataatatccattggctctcctggaattccagctgcagcaacaactggctcagctacaacaa |
342 |
Q |
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| T |
3978089 |
taagcacgagactttctaagcaccagctgcagggcagtcatgatgtccattggctcacctggaatt---gcagcagcaacaacaggctcaactgcaacaa |
3977993 |
T |
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| Q |
343 |
cttcttct |
350 |
Q |
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| T |
3977992 |
cctcttct |
3977985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 49 - 313
Target Start/End: Complemental strand, 827084 - 826820
Alignment:
| Q |
49 |
cacttacaccagcccattctccaagggtctttgcatttggaacagtcaacaagctgacgctgtgttcagcacaaagggctttcaccaacttgacgtaatc |
148 |
Q |
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||||||||||||||||||||||||| ||||| ||| | ||||| |||| | || || |||| ||||||||||| || || || | || || || || |
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| T |
827084 |
cacttacaccagcccattctccaagtgtcttcgcactaggaactgtcagaagactaacattgtgctcagcacaaagagccttgacaagtttaacatagtc |
826985 |
T |
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| Q |
149 |
aggttggtcacaatcctcagcaagaacacagagctgtgcagcatgcttctcgatcactttagcactttcatgaagaccacgtgcaagtccaccatacgca |
248 |
Q |
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| T |
826984 |
aggctggtcacaatcttctgcaagaacacaaagctgtcctgtgttcttctcaattacttttgcaccttcatggaggccacgtgcaagaccaccatatgcc |
826885 |
T |
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| Q |
249 |
cgagactttctcaacacaagctgaactgcggtcataatatccattggctctcctggaattccagc |
313 |
Q |
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||||| || | |||||| || | || ||||| || ||||||||||| |||||||||||||| |
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| T |
826884 |
aatgacttcctaagcacaagttgcaaggcagtcatgatgtccattggctcgcctggaattccagc |
826820 |
T |
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