View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_45 (Length: 410)
Name: NF19358_low_45
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 20 - 395
Target Start/End: Complemental strand, 2995305 - 2994929
Alignment:
| Q |
20 |
aatatccattaatctagaaaggtaacagaacaaaaattactacagtggaaagaaaatcacatttattcaaattggaagaagtcatattgccgatagcatg |
119 |
Q |
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| T |
2995305 |
aatatccattaatctagaaaggtaacagaacaaaaattactacagtggaaagaaaatcacatttattcaaattggaagaagtcatattgccgatagcatg |
2995206 |
T |
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| Q |
120 |
gtgcatgcttgacaatggaacttgttgattttgaccaagtctgaagcatcacaaggtgtgataaaaaacaaactatggtggatataagtcaacaagttat |
219 |
Q |
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| T |
2995205 |
gtgcatgcttgataatggaacttgttgattttgactaagtctgaagcatcacaaggtgtgataaaaaacaaactatggtggatataagtcaacaagttat |
2995106 |
T |
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| Q |
220 |
tattaggccaacaagtgctcatagatattgtttggtttctagctacatttattcatagttgttgaaatattggaaaccataaaagaaaataattaataag |
319 |
Q |
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| T |
2995105 |
tattaggtcaacaagtgctcatagatattgtttggtttctagctacatttattcatagttgttgaaatattggaaaccataaaagaaaataattaataag |
2995006 |
T |
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| Q |
320 |
aaaactagctacaagtgta-taagtatacaaatttagtggacatgatgtgatgtatggcgagtttttataagatatt |
395 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2995005 |
aaaactagctacaactgtattaagtatacaaatttagtggacatgatgtgatgtatggtgagtttttataagatatt |
2994929 |
T |
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