View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19358_low_47 (Length: 405)
Name: NF19358_low_47
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 28674620 - 28675022
Alignment:
| Q |
1 |
tgacaatatactaaagaataatgtcaccaaaaaatggaagagttaagacaaatnnnnnnnnnn-ctattaaatttgttgcttactcctaaagtagtactt |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
28674620 |
tgacaatatactaaagaataatgtcaccaaaaaatggaagagttaagacaaataaaaaaaaaaactattaaatttgttgcttactcctaaagtagtactt |
28674719 |
T |
|
| Q |
100 |
tgacaaacctgcaaacttttggtagttcttcagcttttggcggatgaggttcccagaaaaatgcaagtgagtccctccaatcagcagattggtcttggta |
199 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28674720 |
tggcaaacctgcaaacttttggtagttcttcagcttttgggggatgaggttcccagaaaaatgcaagtgtgtccctccaatcagcagattggtcttggta |
28674819 |
T |
|
| Q |
200 |
aagagtaaaattggaaagataaacaacttttttggtgagatcacgggtgtagtactccttcctcgccttggcatcttgttggtgaaatctacaagtttct |
299 |
Q |
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|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28674820 |
aagagtaaaattggagagataaacaacttttttggtgagatcacgggtgtagtactccttcctcgccttggcatcttgttggtgaaatctacaagttcct |
28674919 |
T |
|
| Q |
300 |
ttgatcatctcatccaaaatttgtgttggaattccatgatttattacttgaaagaatccccatttctcacttgcattttgaacttttctcacaacttcat |
399 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28674920 |
ttgatcatctcatccaaaatatgtgttggaattccatgatttatcacttgaaagaatccccatttctcacttgcattttgaacttttctcacaacttcat |
28675019 |
T |
|
| Q |
400 |
ctc |
402 |
Q |
| |
|
||| |
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|
| T |
28675020 |
ctc |
28675022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 119 - 402
Target Start/End: Original strand, 28670595 - 28670878
Alignment:
| Q |
119 |
tggtagttcttcagcttttggcggatgaggttcccagaaaaatgcaagtgagtccctccaatcagcagattggtcttggtaaagagtaaaattggaaaga |
218 |
Q |
| |
|
||||||||| || ||||| || |||| ||| |||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||| |
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|
| T |
28670595 |
tggtagttcatcggctttaggaggatcgggtgcccagaaaaatgcaagtgtgtccctccaatcagcagattggtctaggtagagagtaaaattggaaaga |
28670694 |
T |
|
| Q |
219 |
taaacaacttttttggtgagatcacgggtgtagtactccttcctcgccttggcatcttgttggtgaaatctacaagtttctttgatcatctcatccaaaa |
318 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
28670695 |
taaacaacttttttggtaagatcacgggtgtagtactccttcctcaccttggcatcttgttggtgaaatctacaagttccattgatcatctcatccaaaa |
28670794 |
T |
|
| Q |
319 |
tttgtgttggaattccatgatttattacttgaaagaatccccatttctcacttgcattttgaacttttctcacaacttcatctc |
402 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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|
| T |
28670795 |
tctgtgttggaattccatgatttattacttgaaagaatccccatttctcacttgcatttcgaacttttcttacaacttcatctc |
28670878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 103 - 402
Target Start/End: Original strand, 28641996 - 28642295
Alignment:
| Q |
103 |
caaacctgcaaacttttggtagttcttcagcttttggcggatgaggttcccagaaaaatgcaagtgagtccctccaatcagcagattggtcttggtaaag |
202 |
Q |
| |
|
|||||||||||||| ||||||||| ||| | || || || |||||| |||||||||||||||||| ||||||||| ||||||||||| |||| | |||| |
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|
| T |
28641996 |
caaacctgcaaactggtggtagttcatcaacattgggagggtgaggtgcccagaaaaatgcaagtgtgtccctccactcagcagattgatcttcggaaag |
28642095 |
T |
|
| Q |
203 |
agtaaaattggaaagataaacaacttttttggtgagatcacgggtgtagtactccttcctcgccttggcatcttgttggtgaaatctacaagtttctttg |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||| |||| | ||| ||||| ||||||||||||||| ||||| |
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|
| T |
28642096 |
agtaaaattggaaagataaacaacttttttagtgagatcacgggtgtaatactctttcctcaccttaggatcctgttgatgaaatctacaagttcctttg |
28642195 |
T |
|
| Q |
303 |
atcatctcatccaaaatttgtgttggaattccatgatttattacttgaaagaatccccatttctcacttgcattttgaacttttctcacaacttcatctc |
402 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||| || || ||||||||||||||||| |
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|
| T |
28642196 |
atcatctcatccaaaacatgaactggaattccatgatttattacttgaaagaatccccatttctcacatgcattttcaagttgtctcacaacttcatctc |
28642295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 103 - 402
Target Start/End: Original strand, 28650857 - 28651156
Alignment:
| Q |
103 |
caaacctgcaaacttttggtagttcttcagcttttggcggatgaggttcccagaaaaatgcaagtgagtccctccaatcagcagattggtcttggtaaag |
202 |
Q |
| |
|
|||||||||||||| ||||||||| ||| | || || ||||||||| |||||||||||||||||| ||||||||| ||||||||||| |||| | |||| |
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|
| T |
28650857 |
caaacctgcaaactggtggtagttcatcaacattgggaggatgaggtgcccagaaaaatgcaagtgtgtccctccactcagcagattgatcttcggaaag |
28650956 |
T |
|
| Q |
203 |
agtaaaattggaaagataaacaacttttttggtgagatcacgggtgtagtactccttcctcgccttggcatcttgttggtgaaatctacaagtttctttg |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||| |||| | ||| ||||| ||||||||||||||| ||||| |
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|
| T |
28650957 |
agtaaaattggaaagataaacaacttttttagtgagatcacgggtgtaatactctttcctcaccttaggatcctgttgatgaaatctacaagttcctttg |
28651056 |
T |
|
| Q |
303 |
atcatctcatccaaaatttgtgttggaattccatgatttattacttgaaagaatccccatttctcacttgcattttgaacttttctcacaacttcatctc |
402 |
Q |
| |
|
|||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||| || || ||||||||||||||||| |
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|
| T |
28651057 |
atcatctcatgcaaaacatgaactggaattccatgatttattacttgaaagaatccccatttctcacatgcattttcaagttgtctcacaacttcatctc |
28651156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 163 - 401
Target Start/End: Original strand, 28696144 - 28696382
Alignment:
| Q |
163 |
caagtgagtccctccaatcagcagattggtcttggtaaagagtaaaattggaaagataaacaacttttttggtgagatcacgggtgtagtactccttcct |
262 |
Q |
| |
|
|||||||||||||||||| ||||| | || ||||||||| || |||| |||| |||||||||||| ||| || |||| | || || ||||| || || |
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|
| T |
28696144 |
caagtgagtccctccaattagcagcaggatcatggtaaagactataattagaaacataaacaactttcttgttgggatcgcatgtataatactcttttct |
28696243 |
T |
|
| Q |
263 |
cgccttggcatcttgttggtgaaatctacaagtttctttgatcatctcatccaaaatttgtgttggaattccatgatttattacttgaaagaatccccat |
362 |
Q |
| |
|
| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28696244 |
caccttggcatcttgttgatgaaatctacaagttcctttgatcatctcatccaaaatttgtgttggaattccatgatttattacttgaaagaatccccaa |
28696343 |
T |
|
| Q |
363 |
ttctcacttgcattttgaacttttctcacaacttcatct |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28696344 |
ttctcacttgcattttgaacttttctcacaacttcatct |
28696382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 163 - 402
Target Start/End: Original strand, 28691259 - 28691498
Alignment:
| Q |
163 |
caagtgagtccctccaatcagcagattggtcttggtaaagagtaaaattggaaagataaacaacttttttggtgagatcacgggtgtagtactccttcct |
262 |
Q |
| |
|
|||||||||||||||||| ||||| | || ||||||||| || |||| |||| ||||||||||| ||| | ||||||| ||||| ||||| ||||| |
|
|
| T |
28691259 |
caagtgagtccctccaattagcagcaggatcatggtaaagactataattagaaacgtaaacaactttcttgttaggatcacgtgtgtaatactctttcct |
28691358 |
T |
|
| Q |
263 |
cgccttggcatcttgttggtgaaatctacaagtttctttgatcatctcatccaaaatttgtgttggaattccatgatttattacttgaaagaatccccat |
362 |
Q |
| |
|
|| | |||||||||| ||||||||||||||| ||||||||||||||||||||| || | || ||||||||||||||||||||||||||||||||| |
|
|
| T |
28691359 |
taccataacatcttgttgatgaaatctacaagttcctttgatcatctcatccaaaacatgagctgaaattccatgatttattacttgaaagaatccccac |
28691458 |
T |
|
| Q |
363 |
ttctcacttgcattttgaacttttctcacaacttcatctc |
402 |
Q |
| |
|
||||||| |||||||| ||||||||||||| ||||||||| |
|
|
| T |
28691459 |
ttctcacatgcattttcaacttttctcacagcttcatctc |
28691498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 271 - 352
Target Start/End: Original strand, 28717570 - 28717651
Alignment:
| Q |
271 |
catcttgttggtgaaatctacaagtttctttgatcatctcatccaaaatttgtgttggaattccatgatttattacttgaaa |
352 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||||||||||| || |||| |||||||||||||||||||||||| |
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|
| T |
28717570 |
catcttgttgatgaaatctacaagttcctttgatcatctcatccaaaacatgagttgaaattccatgatttattacttgaaa |
28717651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 366
Target Start/End: Complemental strand, 41238565 - 41238469
Alignment:
| Q |
270 |
gcatcttgttggtgaaatctacaagtttctttgatcatctcatccaaaatttgtgttggaattccatgatttattacttgaaagaatccccatttct |
366 |
Q |
| |
|
|||||||||| |||||||||||| || | ||||||||||||||||||| || |||||| |||||||| || ||||| || |||||||| |||| |
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|
| T |
41238565 |
gcatcttgttcatgaaatctacaaattccattgatcatctcatccaaaacatgaagtggaataccatgattgatcacttggaaaaatccccagttct |
41238469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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