View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_48 (Length: 403)
Name: NF19358_low_48
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_48 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 11696247 - 11695863
Alignment:
| Q |
1 |
gaagtaaagaacataaccaaccaatatatagatgagagaagcaagtatgattgtgcggtaacgtccaagaaaagaatcagcaatgaaagcaccaaagaga |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11696247 |
gaagtaaggaacataaccaaccaatatatagatgagagaagcaagcatgattgtgcggtagcgtccaagaaaagaatcagcaatgaaagcaccaaagaga |
11696148 |
T |
|
| Q |
101 |
ggaagtagagaagcagttccagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattccctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11696147 |
ggaagtagagaagcagttccagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattccctt |
11696048 |
T |
|
| Q |
201 |
gaattccataatatgatgccctctctgccatttccacacctaaatataacattcacaattcattctcaatcttatttgataaaaataaataaaactaaag |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
11696047 |
gaattccataatatgatgccctctctgccatttccacacctaaatataacattcacaattcattctcaatctcatttcataaaaataaataaaactaaac |
11695948 |
T |
|
| Q |
301 |
atgtattttcaagtctgttagaagttataatctctgctgttctaaattagtccattttaagaatggactaatccagtaccgcaga |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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|
| T |
11695947 |
atgtattttcaagtctgttagaagttataatctctgctgttctaaattagtccattttaagaatggactaacccagaaccgcaga |
11695863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 26 - 264
Target Start/End: Complemental strand, 11798063 - 11797825
Alignment:
| Q |
26 |
atatagatgagagaagcaagtatgattgtgcggtaacgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccagccc |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11798063 |
atatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccaaccc |
11797964 |
T |
|
| Q |
126 |
aaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaattccataatatgatgccctctc |
225 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11797963 |
aaacattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaattccataatatgataccctctc |
11797864 |
T |
|
| Q |
226 |
tgccatttccacacctaaatataacattcacaattcatt |
264 |
Q |
| |
|
||||| ||||||||||||| |||||||||| |||||||| |
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| T |
11797863 |
tgccacttccacacctaaacataacattcataattcatt |
11797825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 20 - 264
Target Start/End: Complemental strand, 11702025 - 11701781
Alignment:
| Q |
20 |
accaatatatagatgagagaagcaagtatgattgtgcggtaacgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttc |
119 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||||||| |||||||| |||||||||||||||||||| |||| |
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| T |
11702025 |
accaagatatagataagagaagcaagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcacctaagagaggaagtagagaagctgttc |
11701926 |
T |
|
| Q |
120 |
cagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaattccataatatgatgc |
219 |
Q |
| |
|
||||||||| ||| ||||| | ||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11701925 |
cagcccaaacatttacattcttagcagctgttgcagtgctctgtttgagtggccctgttagatatgatatcaaattcccttgaattccataatatgatac |
11701826 |
T |
|
| Q |
220 |
cctctctgccatttccacacctaaatataacattcacaattcatt |
264 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||| ||| |||| |
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| T |
11701825 |
cctctctgccacttccacacctaaacataacattcataatccatt |
11701781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 20 - 264
Target Start/End: Complemental strand, 11676132 - 11675888
Alignment:
| Q |
20 |
accaatatatagatgagagaagcaagtatgattgtgcggtaacgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttc |
119 |
Q |
| |
|
||||| ||||| ||||||||||| |||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||| ||||||||| || |
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|
| T |
11676132 |
accaagatataaatgagagaagcgagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaagcaactc |
11676033 |
T |
|
| Q |
120 |
cagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaattccataatatgatgc |
219 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| | |
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| T |
11676032 |
cagcccaaatattcacattctcagcagcagttgcagtgctttgtttgagtggtcctgttagatatgatatcaagttcccttgaatcccataatatgatac |
11675933 |
T |
|
| Q |
220 |
cctctctgccatttccacacctaaatataacattcacaattcatt |
264 |
Q |
| |
|
||||||||||| ||||||||||| | | |||||||| || ||||| |
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|
| T |
11675932 |
cctctctgccacttccacacctatacaaaacattcataactcatt |
11675888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 20 - 264
Target Start/End: Complemental strand, 11684411 - 11684167
Alignment:
| Q |
20 |
accaatatatagatgagagaagcaagtatgattgtgcggtaacgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttc |
119 |
Q |
| |
|
||||| ||||| ||||||||||| |||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||| ||||||||| || |
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| T |
11684411 |
accaagatataaatgagagaagcgagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaagcaactc |
11684312 |
T |
|
| Q |
120 |
cagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaattccataatatgatgc |
219 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| | |
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| T |
11684311 |
cagcccaaatattcacattctcagcagcagttgcagtgctttgtttgagtggtcctgttagatatgatatcaagttcccttgaatcccataatatgatac |
11684212 |
T |
|
| Q |
220 |
cctctctgccatttccacacctaaatataacattcacaattcatt |
264 |
Q |
| |
|
||||||||||| ||||||||||| | | |||||||| || ||||| |
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|
| T |
11684211 |
cctctctgccacttccacacctatacaaaacattcataactcatt |
11684167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 2 - 260
Target Start/End: Complemental strand, 11779225 - 11778968
Alignment:
| Q |
2 |
aagtaaagaacataaccaaccaatatatagatgagagaagcaagtatgattgtgcggtaacgtccaagaaaagaatcagcaatgaaagcaccaaagagag |
101 |
Q |
| |
|
|||| ||||||| |||||||||||| |||||| ||||||||||||||||||||| | || |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11779225 |
aagtgaagaacagaaccaaccaatacatagataagagaagcaagtatgattgtgtgatagcgtccaagaaaagaatcagcaatgaatgcaccaaagagag |
11779126 |
T |
|
| Q |
102 |
gaagtagagaagcagttccagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttg |
201 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||| | |||||| |||||||||||||||||||||| |||||||||||||||||||| || || | |
|
|
| T |
11779125 |
gaaggagagaagcagttccagcccaaacattcacattcttagcagcagttgcagtgctttgtttgagtggccctgttagatatgatatcaagtttccctt |
11779026 |
T |
|
| Q |
202 |
aattccataatatgatgccctctctgccatttccacacctaaatataacattcacaatt |
260 |
Q |
| |
|
|| ||| ||||||| ||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
11779025 |
aaccccaaaatatgacatcctctctgccacctccacacctaaat-taacattcacaatt |
11778968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 163; Significance: 6e-87; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 2 - 264
Target Start/End: Complemental strand, 16688 - 16426
Alignment:
| Q |
2 |
aagtaaagaacataaccaaccaatatatagatgagagaagcaagtatgattgtgcggtaacgtccaagaaaagaatcagcaatgaaagcaccaaagagag |
101 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||| ||||||||||||||||||||| | || |||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
16688 |
aagtgaagaacagaaccaaccaatatatagataagagaagcaagtatgattgtgtgatagcgtccaagaaaagaatcagcaacgaaagcacctaagagag |
16589 |
T |
|
| Q |
102 |
gaagtagagaagcagttccagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttg |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||| || || | |
|
|
| T |
16588 |
gaagtagagaagcagttccagcccaaatattcacattcttagcagctgttgcagtgctttgtttgagtggtcctgttagatatgatatcaagtttccctt |
16489 |
T |
|
| Q |
202 |
aattccataatatgatgccctctctgccatttccacacctaaatataacattcacaattcatt |
264 |
Q |
| |
|
||| ||| ||||||| ||||||||| | ||||||||||||| |||||||||| ||| |||| |
|
|
| T |
16488 |
aatcccaatatatgatatcctctctgctacttccacacctaaacataacattcataatccatt |
16426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 6627 - 6675
Alignment:
| Q |
47 |
atgattgtgcggtaacgtccaagaaaagaatcagcaatgaaagcaccaa |
95 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||| |||||||||| |
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|
| T |
6627 |
atgatggtgcggtaacggccaagaaaagaatcagcaagaaaagcaccaa |
6675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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