View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_49 (Length: 401)
Name: NF19358_low_49
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 4 - 387
Target Start/End: Complemental strand, 37563366 - 37562981
Alignment:
| Q |
4 |
caattttaagccagagatatggactagaccactgaaattgacaacaaaaggaattgaacccaataccttatggggatcacactccaaagtcttaagtcaa |
103 |
Q |
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| T |
37563366 |
caattttaagccagagatatggactagaccactgaaattgacaacgaaaggaattgaacccaataccttatggggatcacactccaaagtcttaagtcaa |
37563267 |
T |
|
| Q |
104 |
caccacaaggccaacccacagtggggttaccttgaaccatatatcgctcacaatttgaatcattgtaattaaaatttctattga--tatgattactccaa |
201 |
Q |
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| T |
37563266 |
caccacaaggccaacccacagtggggttaccttgaaccatatatcgatcacaatttgaatcattgtaattaaaatttccactgagatatgattactccaa |
37563167 |
T |
|
| Q |
202 |
cacttgtaactactaaaatttgtatttttacattgcaagacaaatcaaaactgctaaaaaatcagtatatgattgatagaacattgaatttaccttttga |
301 |
Q |
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| T |
37563166 |
cacttgtaactactaaaatttgtatctttacattgcaagacaaatcaaaactgctaaaaaatcagtatatgattgatagaacattgaatttaccttttga |
37563067 |
T |
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| Q |
302 |
taggcttcgtgtccgtatttatctttgaacaacatcaaatctggcaatgcccaacagggaaatttaatcccatcatgggtcacaac |
387 |
Q |
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| T |
37563066 |
taggcttcgtgtccgtatttatctttgaacaacatcaaatctggcaatgcccaacagggaaatttaatcccatcatgggtcacaac |
37562981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 6691578 - 6691618
Alignment:
| Q |
81 |
cacactccaaagtcttaagtcaacaccacaaggccaaccca |
121 |
Q |
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| T |
6691578 |
cacactccaaggtctaaagtcaacaccaccaggccaaccca |
6691618 |
T |
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