View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_51 (Length: 395)
Name: NF19358_low_51
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_51 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 45439854 - 45439650
Alignment:
| Q |
6 |
agtagcaaagggcatttatgattaaactaactgaataaattattcctctgtcaagaaaatgatggccaacctttagaatcttgaattgggtaaagtgttg |
105 |
Q |
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| T |
45439854 |
agtatcaaagggcattaatgattaaactaactgaataaattattcctctgtcaagaaaatgatggccaacctttagaatcttgaattgggtaaagtgttg |
45439755 |
T |
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| Q |
106 |
gttgcacaactttctttattgtcatattgagtactctcaaagatagtatggtgagagaagatcatgcaagttcaaagagaagattctttgtatgcaaagt |
205 |
Q |
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| T |
45439754 |
gttgcacaactttctttattgtcattttgagtactctcaaagatagtatggtgagagaagatcatgcaagttcaaagagaagattctttgtatgcaaagt |
45439655 |
T |
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| Q |
206 |
aataa |
210 |
Q |
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||||| |
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| T |
45439654 |
aataa |
45439650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 216 - 379
Target Start/End: Complemental strand, 45439622 - 45439457
Alignment:
| Q |
216 |
ttaaattgttccgagtaaaattgaactcaattttt--aataagattttcattttaaaatttgtgaatggaaaaaatggatagaaggaaaaactcactaaa |
313 |
Q |
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|||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45439622 |
ttaaattgttccgagtgaaattgaactcattttttttaataagattttcattttaaaatttgtgaatggaaaaaatggatagaaggaaaaactcactaaa |
45439523 |
T |
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| Q |
314 |
agtgacatacacaattttccggtacagattagtcattacgataatggatagatacatagaacatat |
379 |
Q |
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| T |
45439522 |
agtgacatacacaattttccggtacagattagtcattacaataatggatagatacatagaacatat |
45439457 |
T |
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