View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_53 (Length: 381)
Name: NF19358_low_53
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 11 - 363
Target Start/End: Original strand, 14984182 - 14984519
Alignment:
| Q |
11 |
cagagacctaaattatcagaaattcaaaaggaccactttcccttaaaccacgtataaaagtccaatgtctaggtaaaagagaaatgactcagctgtgaac |
110 |
Q |
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| T |
14984182 |
cagagacctaaattatcagaaattcaaaaggaccactttccctcaaaccacgtataaaagtccaatgtctaggtaaaagagaaatgactcagctgtgaac |
14984281 |
T |
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| Q |
111 |
agcaatttgaatctctgcaatcaatcctttatattttgcaatgttttgaaaaccagacaggttttgaaaaccagacagaatatcaaacctgcgagacttc |
210 |
Q |
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| T |
14984282 |
agcaatttgaatctctgcaatcaatcctttatattttgcaatgttttgaaa------------------accagacagaatatcaaacctgcgagacttc |
14984363 |
T |
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| Q |
211 |
cggtcatggtaaaattggggttcaa---tagttgaaccggatgacaaataaataaaaggtattaaaaaagtacagtaagaacatggaaaaacgattttga |
307 |
Q |
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| T |
14984364 |
cggtcatggtaaaattggggttcaactatagttgaaccggatgacaaataaataaaaggtattaaaaaagtacagtaagaacatggaaaaacgattttga |
14984463 |
T |
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| Q |
308 |
cagtgcagaagctttaaagattgtcagcattcccatatcagtacgttcagcatacc |
363 |
Q |
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| T |
14984464 |
cagtgcagaagctttaaagattgtcagcattcccatatcagtacgttcagcatacc |
14984519 |
T |
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