View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_56 (Length: 377)
Name: NF19358_low_56
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 2 - 365
Target Start/End: Original strand, 30398647 - 30399023
Alignment:
| Q |
2 |
ataagattcacttttacctcaca--tattaacgtactggccacaacaaaagcagaataaacaagnnnnnnnncacattcagttagcaaagttctccaatc |
99 |
Q |
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||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30398647 |
ataagattcacttttacctcacacatattaacgtactggtcacaacaaaagcagaataaacaagaaaaaaaacacattcagttagcaaagttctccaatc |
30398746 |
T |
|
| Q |
100 |
actgggatcctgatattgatttgatacagaatattgcataagcagtgccttaggatcagaggtgg-----------ttatctgcattgttagaaga-ctc |
187 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
30398747 |
actgggatcctgatattgatttgatacagaatattgcataagcagtgccttaggatcagaggtggatcagaggtggttatctgcattgttagaagaactc |
30398846 |
T |
|
| Q |
188 |
tctcaaaatcttccataaacctcatcctttgtttttccatcaatcaatagaatttgtcccttgggttccataagtcatgagaggcaaattaaaacaataa |
287 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
30398847 |
tctcaaaatcttccataaacctcatcctttgttttttcatcaatcaatagaatttgttccttgg-ttccataagtcatgagaggcaaattaaaacaataa |
30398945 |
T |
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| Q |
288 |
agggttggtgtaaattagaaacattttgaaaaataatccatgatactaattgaacagccaaagttcgtagcaacttta |
365 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30398946 |
agggttggtgtaaattagaaacattttgaaaaataatccatgatactaattgaacagccaaagttcgtagcaacttta |
30399023 |
T |
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