View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_6 (Length: 723)
Name: NF19358_low_6
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 156 - 700
Target Start/End: Complemental strand, 14632928 - 14632393
Alignment:
| Q |
156 |
aatattgagatcgaaaaatataataacattctactatggtttctttctttcaaaagtttgggggaccgtggccat-gcaagttccccttctagcttcgtc |
254 |
Q |
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|||||| |||||||||||||||||| ||| |||||||||||| || |||||||||||||||||||||||||| || |||||| ||||||| |||||| || |
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| T |
14632928 |
aatattaagatcgaaaaatataatatcatactactatggttttttcctttcaaaagtttgggggaccgtggctattgcaagtcccccttcgagcttcctc |
14632829 |
T |
|
| Q |
255 |
ccttgtgagaagacaaatcatacaactacagaaagctaccataaaatagaattatgcatagcaaactactagtgtacgtatagaataaaagtaagcataa |
354 |
Q |
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| T |
14632828 |
cctggcgagaagacaaatcatacaactacgtacgtaaagcataaaatagaattacgcatagcaaactactagtatacgtatagaataaaa---------- |
14632739 |
T |
|
| Q |
355 |
aactcaaaacctttttgcataaaaa-ataaatcagtctactatgtggggatttggaagagacaatttatattgttgtggaatggtgattcatgtttgtat |
453 |
Q |
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| T |
14632738 |
--cttgaaaccttattgctgaaaaacataaatcaatctactatgtggggatttggaagagacaatttatcttgtcatagaatggtgattcatgtttgaat |
14632641 |
T |
|
| Q |
454 |
gaactacattagtggttacggaaaagaagaatcaattatacatttgtttgtagggagtgaatcttttggcggtaattgcgattttgatcttcattggttg |
553 |
Q |
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|| ||||| ||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||| |
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| T |
14632640 |
gacctacactagaggttacaggaaagaagaatcaattatacatttgtttgtagggagtgaatcttttggcggtaattgagatttcgttcttcattggtta |
14632541 |
T |
|
| Q |
554 |
ggtatttcaactattaatttagctgatgttttggaacacgcggttcaatttggagttttaaatggtttcaagaaaaataatcgtgttggacttcaagttg |
653 |
Q |
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| T |
14632540 |
ggtatttcaactattaatctagcagatgttttggaacacagggttcaatttggagtttcaaatggtttcaataaaaataatcgtgtacgagttcaagttg |
14632441 |
T |
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| Q |
654 |
tatggttggatactaa-tagattgtttggaaggagcgcaatgcaagga |
700 |
Q |
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| T |
14632440 |
tttggttggatactaattagattgtttgtaatgagcgcaatgcaagga |
14632393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 78 - 514
Target Start/End: Complemental strand, 12891892 - 12891453
Alignment:
| Q |
78 |
aaagatttttgtataatgacaaacatattgaatcaaaagaatatcattatacactattgtataaaagtccacaaaa--taaatattgagatcgaaaaata |
175 |
Q |
| |
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||||||||||||| || |||||||||||||| ||||||||| ||||||||||| ||| |||||||||| ||||||| |||||||||||| |||||||| |
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| T |
12891892 |
aaagatttttgtacaaggacaaacatattgagtcaaaagaagatcattatacaatatcgtataaaagttcacaaaaaataaatattgagactgaaaaata |
12891793 |
T |
|
| Q |
176 |
taataacattctactatggtttctttcttt---caaaagtttgggggaccgtggccat-gcaagttccccttctagcttcgtcccttgtgagaagacaaa |
271 |
Q |
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|||||||| ||||||| |||| ||| ||| ||||||||| ||||| | ||||||| || || |||||||||| | | ||| | | |||||||||| |
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| T |
12891792 |
caataacatactactatagttttttttttttctcaaaagttttggggatcttggccattgctggtcccccttctagttccttccatgataagaagacaaa |
12891693 |
T |
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| Q |
272 |
tcatacaactacagaaagctaccataaaatagaattatgcatagcaaactactagtgtacgtatagaataaaagtaagcataaaactcaaaacctttttg |
371 |
Q |
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||||| ||||||| ||||| |||||||||||||| ||||||||||| ||||| ||| ||||| |||||||||||| ||||| ||||||||||| ||| |
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| T |
12891692 |
tcataaaactacaaaaagc----ataaaatagaattacgcatagcaaacaactagcgtatgtataaaataaaagtaagtataaacctcaaaaccttattg |
12891597 |
T |
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| Q |
372 |
cataaaaa-ataaatcagtctactatgtggggatttggaagagacaatttatattgttgtggaatggtgattcatgtttgtatgaactacattagtggtt |
470 |
Q |
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|| ||||| |||||| |||||||||| ||||||||| ||| ||||||||||| |||| ||| |||||||||||||| || |||| |||| | | |||| |
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| T |
12891596 |
cagaaaaacataaatgagtctactatatggggatttcgaatagacaatttatcttgtcatgggatggtgattcatgtctgaatgacctacgctggaggtt |
12891497 |
T |
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| Q |
471 |
acggaaaagaagaatcaattatacatttgtttgtagggagtgaa |
514 |
Q |
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| T |
12891496 |
acaggaaagaagattcaattatacatttgtttgtaaggggtgaa |
12891453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 313 - 700
Target Start/End: Complemental strand, 14648657 - 14648271
Alignment:
| Q |
313 |
tagcaaactactagtgtacgtatagaataaaagtaagcataaaactcaaaacctttttgcataaaaa-ataaatcagtctactatgtggggatttggaag |
411 |
Q |
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|||||||||| | ||||||||| | ||||||||| ||| | |||||||||||||| ||||| ||||| ||| || ||||||||| |||||||||||||| |
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| T |
14648657 |
tagcaaactattggtgtacgtagaaaataaaagtgagcgtcaaactcaaaaccttattgcagaaaaacatagatgggtctactatatggggatttggaag |
14648558 |
T |
|
| Q |
412 |
agacaatttatattgttgtggaatggtgattcatgtttgtatgaactacattagtggttacggaaaagaagaatcaattatacatttgtttgtagggagt |
511 |
Q |
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| T |
14648557 |
aga--atttatcttgtcgtgggatggtgattcatatttgaatgacatacactagaggttacgggaaataaaaatcaattatacatttgtttgtagggtgt |
14648460 |
T |
|
| Q |
512 |
gaatcttttggcggtaattgcgattttgatcttcattggttgggtatttcaactattaatttagctgatgttttggaacacgcggttcaatttggagttt |
611 |
Q |
| |
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|| |||||||| |||| ||| |||| | | || |||| |||||||||||||||| || || || | |||||||||| || ||||||||| ||| || |
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| T |
14648459 |
gagtcttttggtggtatttgacatttcgtttttaattgcttgggtatttcaacta-acatccagttgtttttttggaacaagccgttcaatttagaggtt |
14648361 |
T |
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| Q |
612 |
taaatggtttcaagaaaaataatcgtgttggacttcaagttgtatggttggatacta-atagattgtttggaaggagcgcaatgcaagga |
700 |
Q |
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| T |
14648360 |
caaatggtttcaagaaagataatcatgtaggacttcaagctgtatggtcggatactatatagattgtttggaaggagcgcaatgcaagga |
14648271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 78 - 172
Target Start/End: Complemental strand, 14633285 - 14633191
Alignment:
| Q |
78 |
aaagatttttgtataatgacaaacatattgaatcaaaagaatatcattatacactattgtataaaagtccacaaaataaatattgagatcgaaaa |
172 |
Q |
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| T |
14633285 |
aaagatttttgtataatgacaaacatattgaatgaaaacaatatcattatacaatattgtataaaagtccacaagataaatattaagatcgaaaa |
14633191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 601 - 700
Target Start/End: Complemental strand, 14639079 - 14638979
Alignment:
| Q |
601 |
atttggagttttaaatggtttcaagaaaaataatcgtgttggacttcaagttgtatggttggatactaa-tagattgtttggaaggagcgcaatgcaagg |
699 |
Q |
| |
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||||||||||| |||||||||||| ||| ||||| |||| || |||||||||| |||||||||||||| |||||||| ||||||||||||| ||||||| |
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| T |
14639079 |
atttggagtttcaaatggtttcaataaagataattgtgtacgagttcaagttgtttggttggatactaattagattgtgtggaaggagcgcagtgcaagg |
14638980 |
T |
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| Q |
700 |
a |
700 |
Q |
| |
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| T |
14638979 |
a |
14638979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 14639188 - 14639134
Alignment:
| Q |
17 |
agcagggacagtgccataaatttagcttagggggg-ccgagttgaaagtataatt |
70 |
Q |
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| T |
14639188 |
agcagggacagtgccagaaatttagcttaggggggaccgagttgaaagtataatt |
14639134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 558 - 608
Target Start/End: Complemental strand, 12891232 - 12891182
Alignment:
| Q |
558 |
tttcaactattaatttagctgatgttttggaacacgcggttcaatttggag |
608 |
Q |
| |
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||||||||||||| || ||||||||||||||| |||||||||||||||| |
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| T |
12891232 |
tttcaactattaacccagttgatgttttggaacatgcggttcaatttggag |
12891182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 645 - 693
Target Start/End: Complemental strand, 12891180 - 12891131
Alignment:
| Q |
645 |
ttcaagttgtatggttggatactaat-agattgtttggaaggagcgcaat |
693 |
Q |
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|||||| ||||||||||||||||| | |||||||||||||||||| |||| |
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| T |
12891180 |
ttcaagctgtatggttggatactatttagattgtttggaaggagcacaat |
12891131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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