View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_61 (Length: 367)
Name: NF19358_low_61
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_61 |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 8 - 351
Target Start/End: Original strand, 27694068 - 27694411
Alignment:
| Q |
8 |
agattattcttatcaaagatacgatattcaacatgctgctaggtggattgaacaagtcttgccgttttctttgcttcttttggtggttttcattcgccaa |
107 |
Q |
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| T |
27694068 |
agattcttcttatcaaagatacgatattcaacatgctgctaggtggattgaacaagtcttgccgttttctttgcttcttttggtggttttcattcgccaa |
27694167 |
T |
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| Q |
108 |
catttgcaaggttcattctcaatgaaaaccaaactatacagattgtttattgtacttttttgtatttaaagattggatttttaccctttcttgatttgat |
207 |
Q |
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| T |
27694168 |
catttgcaaggttcattctcaatgaaaaccaaactatacagattgtttattgtacttttttgtatttaaagattggatttttaccctttcttgatttgat |
27694267 |
T |
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| Q |
208 |
tcgaaataatctgtttaaagtttggtgatctttgtggttgcagggttttttgttaccatttggattgctgctgtgctttttaagtcaaatgacattctgc |
307 |
Q |
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| T |
27694268 |
ttgaaataatctgtttaaagtttggtgatctttgtggttgcagggttttttgttaccatttggattgctgctgtgctttttaagtcaaatgacattctgc |
27694367 |
T |
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| Q |
308 |
ggaaacaaacggcgttgaaggtatgagagtttgtgattctgtgt |
351 |
Q |
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| T |
27694368 |
ggaaacaaacggctttgaaggtatgagagtttgtgattctgtgt |
27694411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 240 - 312
Target Start/End: Original strand, 4479419 - 4479492
Alignment:
| Q |
240 |
tgtggttgcagggttttttgttaccatttggattgct-gctgtgctttttaagtcaaatgacattctgcggaaa |
312 |
Q |
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| T |
4479419 |
tgtggttgcagggttttttgttaccatttggattgctggctatgctttctaggtcaaatgacattctgctgaaa |
4479492 |
T |
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