View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_62 (Length: 359)
Name: NF19358_low_62
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_62 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 42817688 - 42818029
Alignment:
| Q |
1 |
atcacacagaagtccgacgtatacagctttggcgtgctgctactcgaattgctaacaggaaaggttccaatgagatatcctggttatgaggatgttgttg |
100 |
Q |
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| T |
42817688 |
atcacacagaagtccgacgtatacagctttggcgtgctgctactcgaattgctaacaggaaaggttccaatgagatatccgggttatgaggatgttgttg |
42817787 |
T |
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| Q |
101 |
atcttccaagatgggttagatctgttgtgagagaggaatggacagctgaagtatttgacgaagaacttcttagaggacaatatgtcgaagaggaaatggt |
200 |
Q |
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| T |
42817788 |
atcttccaagatgggttagatctgttgtgagagaggaatggacagctgaagtatttgacgaagaacttcttagaggacaatatgtcgaagaggaaatggt |
42817887 |
T |
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| Q |
201 |
gcagatgcttcagattgcacttgcatgtgtggctaagacaccagatatgaggcctagaatggatgaagctgttagaatgattgaggaaattaaacatcct |
300 |
Q |
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| T |
42817888 |
gcagatgcttcagattgcacttgcatgtgtggctaagacaccagatatgaggcctagaatggatgaagctgttagaatgattgaggaaattaaaaatcct |
42817987 |
T |
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| Q |
301 |
gagtttaagaacagaacatcctctgaatctgaatattctaat |
342 |
Q |
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| T |
42817988 |
gagtttaagaacagaacatcctctgaatctgaatattctaat |
42818029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 181 - 334
Target Start/End: Original strand, 28842370 - 28842523
Alignment:
| Q |
181 |
tatgtcgaagaggaaatggtgcagatgcttcagattgcacttgcatgtgtggctaagacaccagatatgaggcctagaatggatgaagctgttagaatga |
280 |
Q |
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| T |
28842370 |
tatgttgaagaggagatggtgcagatgcttcagattgcattggcttgtgtggcaaaggtggtagataataggccaacaatggatgaagttgttagaaaca |
28842469 |
T |
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| Q |
281 |
ttgaggaaattaaacatcctgagtttaagaacagaacatcctctgaatctgaat |
334 |
Q |
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| T |
28842470 |
tggcggaaattaggcaccctgagttgaagaaaagtacatcttctgaatctgaat |
28842523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 159
Target Start/End: Complemental strand, 2385078 - 2385043
Alignment:
| Q |
124 |
gttgtgagagaggaatggacagctgaagtatttgac |
159 |
Q |
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| T |
2385078 |
gttgtgagagaggagtggacagctgaagtatttgac |
2385043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 158
Target Start/End: Complemental strand, 27586391 - 27586319
Alignment:
| Q |
86 |
atgaggatgttgttgatcttccaagatgggttagatctgttgtgagagaggaatggacagctgaagtatttga |
158 |
Q |
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| T |
27586391 |
atgatgatgtggttgatcttccaaaatgggtgcaatctgttgttagagaggaatggactgctgaggtgtttga |
27586319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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