View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19358_low_66 (Length: 342)

Name: NF19358_low_66
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19358_low_66
NF19358_low_66
[»] chr4 (8 HSPs)
chr4 (19-334)||(31870263-31870588)
chr4 (227-279)||(19220564-19220616)
chr4 (250-294)||(38206134-38206178)
chr4 (256-310)||(29195102-29195156)
chr4 (250-319)||(37980156-37980225)
chr4 (229-290)||(56409978-56410039)
chr4 (250-290)||(4686136-4686176)
chr4 (250-290)||(25414223-25414263)
[»] chr5 (4 HSPs)
chr5 (250-310)||(16172992-16173052)
chr5 (254-305)||(19373251-19373302)
chr5 (250-290)||(14656652-14656692)
chr5 (250-290)||(15485428-15485468)
[»] chr7 (2 HSPs)
chr7 (256-320)||(25956307-25956371)
chr7 (256-289)||(21050155-21050188)
[»] chr1 (6 HSPs)
chr1 (256-319)||(49101783-49101846)
chr1 (250-312)||(39964510-39964572)
chr1 (250-314)||(44417470-44417534)
chr1 (250-321)||(15581150-15581221)
chr1 (256-310)||(44486172-44486226)
chr1 (250-290)||(37047012-37047052)
[»] chr3 (6 HSPs)
chr3 (250-290)||(34844398-34844438)
chr3 (250-310)||(42799756-42799816)
chr3 (250-314)||(43303761-43303825)
chr3 (256-294)||(18316513-18316551)
chr3 (256-316)||(23890550-23890609)
chr3 (250-290)||(26158838-26158878)
[»] chr2 (3 HSPs)
chr2 (227-279)||(4618799-4618851)
chr2 (256-310)||(43964003-43964057)
chr2 (250-290)||(6099527-6099567)
[»] chr8 (1 HSPs)
chr8 (250-290)||(40136971-40137011)
[»] chr6 (2 HSPs)
chr6 (250-290)||(6384011-6384051)
chr6 (250-310)||(6691559-6691619)


Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 334
Target Start/End: Complemental strand, 31870588 - 31870263
Alignment:
Q  19 ctgctgaggctccagatgtaagaagactaaacataaccttcacaagttcaatttcaattttcattagagaactttttggcagtaaataccaagtttttgt 118  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31870588 ctgctgaggctccagatgtaagaagaccaaacataaccttcacaagttcaatttcaattttcattagagaactttttggcagtaaataccaagtttttgt 31870489  T
Q  119 aggaaattttccaaaattccgcctctcagaattggcaaagaacagaagagaagag----------tttaacgactatgtactaagtggttaaaagtttca 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||    
T  31870488 aggaaattttccaaaattccgcctctcagaattggcaaagaacagaagagaagagaagagaagagtttaacgactatgtactaagtggttaaaagtttca 31870389  T
Q  209 acatatttagccaactagaattggcacaaggggaaatcgtccctgaaaccttgagaggagcacagtccaaggtctcaagccagcactactaggccaatcc 308  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31870388 acatatttagccaactagaattggcaccaggggaaatcgtccctgaaaccttgagaggagcacagtccaaggtctcaagccagcactactaggccaatcc 31870289  T
Q  309 aaatggattaaaggttttagcctatg 334  Q
    ||||||||||||||||||||| ||||    
T  31870288 aaatggattaaaggttttagcttatg 31870263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 279
Target Start/End: Complemental strand, 19220616 - 19220564
Alignment:
Q  227 aattggcacaaggggaaatcgtccctgaaaccttgagaggagcacagtccaag 279  Q
    ||||||||| || ||||||||  ||||||||||||||||||||||| ||||||    
T  19220616 aattggcactagaggaaatcgaacctgaaaccttgagaggagcacactccaag 19220564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 38206134 - 38206178
Alignment:
Q  250 cctgaaaccttgagaggagcacagtccaaggtctcaagccagcac 294  Q
    ||||| ||||||||||||||||| ||||||||| |||||||||||    
T  38206134 cctgagaccttgagaggagcacactccaaggtcccaagccagcac 38206178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 310
Target Start/End: Complemental strand, 29195156 - 29195102
Alignment:
Q  256 accttgagaggagcacagtccaaggtctcaagccagcactactaggccaatccaa 310  Q
    ||||||||||||||||| ||||||||| ||||||| ||| || ||||||| ||||    
T  29195156 accttgagaggagcacactccaaggtcccaagccaacaccaccaggccaacccaa 29195102  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 37980156 - 37980225
Alignment:
Q  250 cctgaaaccttgagaggagcacagtccaaggtctcaagccagcactactaggccaatccaaatggattaa 319  Q
    ||||| ||||||||||||||||| ||||||||| ||||||| ||  || ||||||| |||| || |||||    
T  37980156 cctgagaccttgagaggagcacactccaaggtcccaagccaacatcaccaggccaacccaagtgaattaa 37980225  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 290
Target Start/End: Complemental strand, 56410039 - 56409978
Alignment:
Q  229 ttggcacaaggggaaatcgtccctgaaaccttgagaggagcacagtccaaggtctcaagcca 290  Q
    ||||||| ||||  |||||  ||||| ||||||||||||||||| ||||||||| |||||||    
T  56410039 ttggcaccagggagaatcgaacctgagaccttgagaggagcacactccaaggtcccaagcca 56409978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 4686136 - 4686176
Alignment:
Q  250 cctgaaaccttgagaggagcacagtccaaggtctcaagcca 290  Q
    ||||| || |||||||||||||| |||||||||||||||||    
T  4686136 cctgagacattgagaggagcacactccaaggtctcaagcca 4686176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 25414223 - 25414263
Alignment:
Q  250 cctgaaaccttgagaggagcacagtccaaggtctcaagcca 290  Q
    ||||| || |||||||||||||| |||||||||||||||||    
T  25414223 cctgagactttgagaggagcacactccaaggtctcaagcca 25414263  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 250 - 310
Target Start/End: Original strand, 16172992 - 16173052
Alignment:
Q  250 cctgaaaccttgagaggagcacagtccaaggtctcaagccagcactactaggccaatccaa 310  Q
    ||||| ||||||||||||||||| ||||||||||||||||| |||||| ||||||| ||||    
T  16172992 cctgagaccttgagaggagcacactccaaggtctcaagccaacactaccaggccaacccaa 16173052  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 305
Target Start/End: Complemental strand, 19373302 - 19373251
Alignment:
Q  254 aaaccttgagaggagcacagtccaaggtctcaagccagcactactaggccaa 305  Q
    |||||||||||| |||||| ||||||||||||||||| ||| || |||||||    
T  19373302 aaaccttgagagtagcacactccaaggtctcaagccaacaccaccaggccaa 19373251  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 14656652 - 14656692
Alignment:
Q  250 cctgaaaccttgagaggagcacagtccaaggtctcaagcca 290  Q
    ||||| ||||||||||||||| | |||||||||||||||||    
T  14656652 cctgagaccttgagaggagcaaactccaaggtctcaagcca 14656692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 15485428 - 15485468
Alignment:
Q  250 cctgaaaccttgagaggagcacagtccaaggtctcaagcca 290  Q
    ||||| ||||||||||||||||| ||||||||| |||||||    
T  15485428 cctgagaccttgagaggagcacactccaaggtcccaagcca 15485468  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 25956307 - 25956371
Alignment:
Q  256 accttgagaggagcacagtccaaggtctcaagccagcactactaggccaatccaaatggattaaa 320  Q
    ||||||||||||||||| ||||||||| |||||||  || |||||||||| |||||||| |||||    
T  25956307 accttgagaggagcacactccaaggtcccaagccaataccactaggccaacccaaatgggttaaa 25956371  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Original strand, 21050155 - 21050188
Alignment:
Q  256 accttgagaggagcacagtccaaggtctcaagcc 289  Q
    ||||||||||||||||| ||||||||||||||||    
T  21050155 accttgagaggagcacactccaaggtctcaagcc 21050188  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 319
Target Start/End: Original strand, 49101783 - 49101846
Alignment:
Q  256 accttgagaggagcacagtccaaggtctcaagccagcactactaggccaatccaaatggattaa 319  Q
    ||||||||||||||||| |||||||||| |||||| ||  |||||||||| |||||||| ||||    
T  49101783 accttgagaggagcacactccaaggtctgaagccaacaacactaggccaacccaaatgggttaa 49101846  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 312
Target Start/End: Complemental strand, 39964572 - 39964510
Alignment:
Q  250 cctgaaaccttgagaggagcacagtccaaggtctcaagccagcactactaggccaatccaaat 312  Q
    ||||| ||||||||||||||||| ||||||||| ||||||| |||  ||||||||| ||||||    
T  39964572 cctgagaccttgagaggagcacactccaaggtcgcaagccaacacctctaggccaacccaaat 39964510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 314
Target Start/End: Original strand, 44417470 - 44417534
Alignment:
Q  250 cctgaaaccttgagaggagcacagtccaaggtctcaagccagcactactaggccaatccaaatgg 314  Q
    ||||| |||||||||| |||||| ||||||||| ||||||||||| | ||| |||| ||||||||    
T  44417470 cctgagaccttgagagcagcacactccaaggtcccaagccagcaccattagaccaaaccaaatgg 44417534  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 321
Target Start/End: Original strand, 15581150 - 15581221
Alignment:
Q  250 cctgaaaccttgagaggagcacagtccaaggtctcaagccagcactactaggccaatccaaatggattaaag 321  Q
    ||||| ||||| ||||||||||| ||||||||| ||||||| ||| || ||||||| |||| ||| ||||||    
T  15581150 cctgagacctttagaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgggttaaag 15581221  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 310
Target Start/End: Original strand, 44486172 - 44486226
Alignment:
Q  256 accttgagaggagcacagtccaaggtctcaagccagcactactaggccaatccaa 310  Q
    ||||||||||||||||| ||||||||  ||| ||| ||| |||||||||||||||    
T  44486172 accttgagaggagcacactccaaggttccaaaccaacaccactaggccaatccaa 44486226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 37047052 - 37047012
Alignment:
Q  250 cctgaaaccttgagaggagcacagtccaaggtctcaagcca 290  Q
    ||||| ||||||||||||||||| ||||||||| |||||||    
T  37047052 cctgagaccttgagaggagcacactccaaggtcccaagcca 37047012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 34844438 - 34844398
Alignment:
Q  250 cctgaaaccttgagaggagcacagtccaaggtctcaagcca 290  Q
    ||||| ||||||||||||||||| |||||||||||||||||    
T  34844438 cctgagaccttgagaggagcacactccaaggtctcaagcca 34844398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 310
Target Start/End: Original strand, 42799756 - 42799816
Alignment:
Q  250 cctgaaaccttgagaggagcacagtccaaggtctcaagccagcactactaggccaatccaa 310  Q
    ||||| ||||||||||||||||| ||||||||| ||||||| ||| || ||||||| ||||    
T  42799756 cctgagaccttgagaggagcacactccaaggtcccaagccaacaccaccaggccaacccaa 42799816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 314
Target Start/End: Complemental strand, 43303825 - 43303761
Alignment:
Q  250 cctgaaaccttgagaggagcacagtccaaggtctcaagccagcactactaggccaatccaaatgg 314  Q
    ||||| |||| |||||||||||  ||||||||||||||||| ||| || ||||||| ||||||||    
T  43303825 cctgagacctggagaggagcacgctccaaggtctcaagccatcaccaccaggccaacccaaatgg 43303761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 18316513 - 18316551
Alignment:
Q  256 accttgagaggagcacagtccaaggtctcaagccagcac 294  Q
    ||||||||||||||||| ||||||||| |||||||||||    
T  18316513 accttgagaggagcacactccaaggtcccaagccagcac 18316551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 316
Target Start/End: Complemental strand, 23890609 - 23890550
Alignment:
Q  256 accttgagaggagcacagtccaaggtctcaagccagcactactaggccaatccaaatggat 316  Q
    ||||||||||||| ||| ||||||||| |||| || ||| ||||| |||||||||||||||    
T  23890609 accttgagaggagtacactccaaggtc-caagtcaacaccactagaccaatccaaatggat 23890550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 26158878 - 26158838
Alignment:
Q  250 cctgaaaccttgagaggagcacagtccaaggtctcaagcca 290  Q
    ||||| ||||||||||||||||| |||||| ||||||||||    
T  26158878 cctgagaccttgagaggagcacactccaagatctcaagcca 26158838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 279
Target Start/End: Original strand, 4618799 - 4618851
Alignment:
Q  227 aattggcacaaggggaaatcgtccctgaaaccttgagaggagcacagtccaag 279  Q
    ||||||||| |||||||||||  ||||||||||||||||||||| | ||||||    
T  4618799 aattggcaccaggggaaatcgaacctgaaaccttgagaggagcatactccaag 4618851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 310
Target Start/End: Original strand, 43964003 - 43964057
Alignment:
Q  256 accttgagaggagcacagtccaaggtctcaagccagcactactaggccaatccaa 310  Q
    ||||||||||||||||| ||||||||| ||| ||| ||||||||| |||| ||||    
T  43964003 accttgagaggagcacactccaaggtcccaaaccaacactactagaccaacccaa 43964057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 6099527 - 6099567
Alignment:
Q  250 cctgaaaccttgagaggagcacagtccaaggtctcaagcca 290  Q
    ||||| ||||||||||||||||| ||||||||| |||||||    
T  6099527 cctgagaccttgagaggagcacactccaaggtcccaagcca 6099567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 40136971 - 40137011
Alignment:
Q  250 cctgaaaccttgagaggagcacagtccaaggtctcaagcca 290  Q
    ||||| ||||||||||||||||| ||||||||| |||||||    
T  40136971 cctgagaccttgagaggagcacactccaaggtcccaagcca 40137011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 6384011 - 6384051
Alignment:
Q  250 cctgaaaccttgagaggagcacagtccaaggtctcaagcca 290  Q
    ||||| ||||||||||||||||| ||||||||| |||||||    
T  6384011 cctgagaccttgagaggagcacactccaaggtcccaagcca 6384051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 310
Target Start/End: Original strand, 6691559 - 6691619
Alignment:
Q  250 cctgaaaccttgagaggagcacagtccaaggtctcaagccagcactactaggccaatccaa 310  Q
    ||||| ||||||||||||||||| |||||||||| ||| || ||| || ||||||| ||||    
T  6691559 cctgagaccttgagaggagcacactccaaggtctaaagtcaacaccaccaggccaacccaa 6691619  T

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