View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19358_low_7 (Length: 698)

Name: NF19358_low_7
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19358_low_7
NF19358_low_7
[»] chr1 (12 HSPs)
chr1 (17-684)||(35207146-35207813)
chr1 (450-684)||(35214352-35214586)
chr1 (463-681)||(35145975-35146193)
chr1 (464-683)||(35145745-35145965)
chr1 (100-204)||(35199321-35199425)
chr1 (91-187)||(35247375-35247471)
chr1 (581-684)||(35265558-35265661)
chr1 (541-684)||(35273087-35273230)
chr1 (122-185)||(35215813-35215876)
chr1 (17-55)||(35199443-35199481)
chr1 (272-305)||(35215580-35215613)
chr1 (464-517)||(35249985-35250038)
[»] chr3 (1 HSPs)
chr3 (622-682)||(898649-898709)


Alignment Details
Target: chr1 (Bit Score: 612; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 17 - 684
Target Start/End: Complemental strand, 35207813 - 35207146
Alignment:
Q  17 acaatattgatttaaatggaagcaatgccttaagtggaccacaatttttaaaacactaatattatttttaggggaaatctctacaaaatataagaattgt 116  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35207813 acaatattgatttaaatggaagcaatgccttaagtagaccacaatttttaaaacactaatattatttttaggggaaatctctacaaaatataagaattgt 35207714  T
Q  117 tgttctaatagtatgaatgaattaaaatataaatctaagttcaaaataatagaaagactcaattaaaataactaaaagttatggagacagaacctatttt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35207713 tgttctaatagtatgaatgaattaaaatataaatctaagttcaaaataatagaaagactcaattaaaataactaaaagttatggagacagaacctatttt 35207614  T
Q  217 ttctctccattgttttattggatcgtttaaaataaaagcaaagtctatgtgatgccatacatgcacttggtagactagaatttaaattatagaaaatata 316  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35207613 ttctctccattgttttattggatcgtttaagataaaagcaaagtctatgtgatgccatacatgcacttggtagactagaatttaaattatagaaaatata 35207514  T
Q  317 attggggtaaatgaaagaaaaataattgttgagtcttcatatttaaggttaaaaccaatggtgtaataacattagtgagcggcgatttgtgatatctatc 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35207513 attggggtaaatgaaagaaaaataattgttgagtcttcatatttaaagttaaaaccaatggtgtaataacattagtgagcggcgatttgtgatatctatc 35207414  T
Q  417 atttgtgtatgctaaatgtcaccggtaaagaaccaaaaaatgacacgttttgaagaattgcctgaagagtgtattgtcaccatactctctcgcacgactc 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35207413 atttgtgtatgctaaatgtcaccggtaaagaaccaaaaaatgacacgttttgaagaattgcctgaagagtgtattgtcaccatactctctcgcacgactc 35207314  T
Q  517 cgatagatgttgacagattctccatcttttctaagacttttcgatcttccgccaattttgatgatgtccggaatcgttttcttcctcctgatatctcacc 616  Q
    ||||||||||||| |||||||||||| ||||||||| |||| ||||| ||||| ||| ||||||||||  |||||||||||||||| |||||||||||||    
T  35207313 cgatagatgttgaaagattctccatcctttctaagattttttgatctgccgccgattctgatgatgtctagaatcgttttcttccttctgatatctcacc 35207214  T
Q  617 catcctctcacaatctccttcacttgccaacattccaaccataaaggctctctatctcgctctctctg 684  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  35207213 catcctctcacaatctccttcacttgccaacattccaaccaaaaaggctctctatctcgctctctctg 35207146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 450 - 684
Target Start/End: Complemental strand, 35214586 - 35214352
Alignment:
Q  450 caaaaaatgacacgttttgaagaattgcctgaagagtgtattgtcaccatactctctcgcacgactccgatagatgttgacagattctccatcttttcta 549  Q
    |||| ||||||| | ||||| ||||||||||||| |||||||| ||||||||| ||||||||||||||||| || ||||  ||||||||| || ||||||    
T  35214586 caaagaatgacaaggtttgatgaattgcctgaagggtgtattgccaccatactttctcgcacgactccgattgacgttggtagattctccgtcctttcta 35214487  T
Q  550 agacttttcgatcttccgccaattttgatgatgtccggaatcgttttcttcctcctgatatctcacccatcctctcacaatctccttcacttgccaacat 649  Q
    ||| |||||||| | ||||| ||| |||||||||| |||||| |||||| ||| |||| |||||| | |||||||||||||||||| ||||  |||||||    
T  35214486 agatttttcgatttgccgccgattctgatgatgtctggaatcattttctcccttctgacatctcatctatcctctcacaatctcctgcactctccaacat 35214387  T
Q  650 tccaaccataaaggctctctatctcgctctctctg 684  Q
    |||||||| |||||||||||||| |||||| ||||    
T  35214386 tccaaccaaaaaggctctctatcacgctctttctg 35214352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 463 - 681
Target Start/End: Original strand, 35145975 - 35146193
Alignment:
Q  463 gttttgaagaattgcctgaagagtgtattgtcaccatactctctcgcacgactccgatagatgttgacagattctccatcttttctaagacttttcgatc 562  Q
    |||||||||||||| |||||| |||||| | |||||||| |||||||||||||||||| ||  |||   |||||||| ||  ||||||||||||||||||    
T  35145975 gttttgaagaattgtctgaagggtgtatcgccaccatacactctcgcacgactccgattgacattggtggattctccgtccattctaagacttttcgatc 35146074  T
Q  563 ttccgccaattttgatgatgtccggaatcgttttcttcctcctgatatctcacccatcctctcacaatctccttcacttgccaacattccaaccataaag 662  Q
    | ||||| ||| |||||||||| ||||| ||||||| ||| |||| || ||| | ||||||||||||  |||||| ||||||||||||||||||| ||||    
T  35146075 tgccgccgattctgatgatgtctggaattgttttctcccttctgacatatcatctatcctctcacaacgtccttcccttgccaacattccaaccaaaaag 35146174  T
Q  663 gctctctatctcgctctct 681  Q
    |||||||||||||||||||    
T  35146175 gctctctatctcgctctct 35146193  T

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Target: chr1; HSP #4
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 464 - 683
Target Start/End: Complemental strand, 35145965 - 35145745
Alignment:
Q  464 ttttgaagaattgcctgaagagtgtattgtcaccatactctctcgcacgactccgatagatgttgacagattctccatcttttctaagactttt-cgatc 562  Q
    |||||||||||||||||||| |||||||| | |||||||||||| ||||| || ||| || |||| |||||||| | || |||||||||||||| |||||    
T  35145965 ttttgaagaattgcctgaagggtgtattgccgccatactctctcccacgaatctgattgacgttggcagattcttcgtcctttctaagactttttcgatc 35145866  T
Q  563 ttccgccaattttgatgatgtccggaatcgttttcttcctcctgatatctcacccatcctctcacaatctccttcacttgccaacattccaaccataaag 662  Q
    | ||||| ||| |||||||||  ||||| ||||||| ||| |||| || ||| | ||| ||||||| ||||||| |||||||||||||||| ||| ||||    
T  35145865 tgccgccgattctgatgatgtttggaattgttttctcccttctgaaatatcatctatcatctcacagtctcctttacttgccaacattccacccaaaaag 35145766  T
Q  663 gctctctatctcgctctctct 683  Q
    ||||||||||| |||||||||    
T  35145765 gctctctatcttgctctctct 35145745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 100 - 204
Target Start/End: Complemental strand, 35199425 - 35199321
Alignment:
Q  100 caaaatataagaattgttgttctaatagtatgaatgaattaaaatataaatctaagttcaaaataatagaaagactcaattaaaataactaaaagttatg 199  Q
    |||||||||||||||||| || ||||||||||||||||||||| |||||| | ||||||| ||||||| || ||||||||| |||||| ||||||| |||    
T  35199425 caaaatataagaattgtttttttaatagtatgaatgaattaaattataaacccaagttcagaataataaaatgactcaatttaaataattaaaagtcatg 35199326  T
Q  200 gagac 204  Q
    |||||    
T  35199325 gagac 35199321  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 91 - 187
Target Start/End: Complemental strand, 35247471 - 35247375
Alignment:
Q  91 aaatctctacaaaatataagaattgttgttctaatagtatgaatgaattaaaatataaatctaagttcaaaataatagaaagactcaattaaaataa 187  Q
    ||||| ||| ||||||||||||||||| || || | ||||||||| |||||||||| ||||||||| ||||| || | || ||||||||| ||||||    
T  35247471 aaatcactagaaaatataagaattgtttttttagtggtatgaatggattaaaatattaatctaagtacaaaaaaaaaaaatgactcaatttaaataa 35247375  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 581 - 684
Target Start/End: Complemental strand, 35265661 - 35265558
Alignment:
Q  581 tgtccggaatcgttttcttcctcctgatatctcacccatcctctcacaatctccttcacttgccaacattccaaccataaaggctctctatctcgctctc 680  Q
    |||| ||||||  ||||| ||| |||| |||||| |  || ||||||| ||||||||||||||||||  ||| |||| ||| ||||| ||||||||||||    
T  35265661 tgtctggaatcaatttctaccttctgacatctcatctgtcatctcacactctccttcacttgccaacgctcctaccaaaaaagctctgtatctcgctctc 35265562  T
Q  681 tctg 684  Q
    ||||    
T  35265561 tctg 35265558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 541 - 684
Target Start/End: Complemental strand, 35273230 - 35273087
Alignment:
Q  541 tcttttctaagacttttcgatcttccgccaattttgatgatgtccggaatcgttttcttcctcctgatatctcacccatcctctcacaatctccttcact 640  Q
    |||||||||||||||| |||||  || || |||  |||| |||  ||||||  ||||| ||| |||| |||||| | ||  ||||||| |||||||| ||    
T  35273230 tcttttctaagactttccgatcagcctccgattccgatgctgtatggaatcaatttctaccttctgacatctcatctattatctcacactctccttccct 35273131  T
Q  641 tgccaacattccaaccataaaggctctctatctcgctctctctg 684  Q
    | |||||||||| |||| ||||| ||||||||| ||||| ||||    
T  35273130 taccaacattcctaccaaaaaggatctctatcttgctctatctg 35273087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 35215876 - 35215813
Alignment:
Q  122 taatagtatgaatgaattaaaatataaatctaagttcaaaataatagaaagactcaattaaaat 185  Q
    |||| |||||||||||||||||||||||||||||| || || | || |||||||| ||| ||||    
T  35215876 taatggtatgaatgaattaaaatataaatctaagtacagaagactaaaaagactccatttaaat 35215813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 35199481 - 35199443
Alignment:
Q  17 acaatattgatttaaatggaagcaatgccttaagtggac 55  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  35199481 acaatattgatttaagtggaagcaatgtcttaagtggac 35199443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 305
Target Start/End: Complemental strand, 35215613 - 35215580
Alignment:
Q  272 catacatgcacttggtagactagaatttaaatta 305  Q
    ||||||||||||||||||||||||| ||||||||    
T  35215613 catacatgcacttggtagactagaaattaaatta 35215580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 517
Target Start/End: Complemental strand, 35250038 - 35249985
Alignment:
Q  464 ttttgaagaattgcctgaagagtgtattgtcaccatactctctcgcacgactcc 517  Q
    |||||| |||||||| |||||||| |||| | ||||||||||||| ||||||||    
T  35250038 ttttgatgaattgccggaagagtgcattgccgccatactctctcgaacgactcc 35249985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 622 - 682
Target Start/End: Original strand, 898649 - 898709
Alignment:
Q  622 tctcacaatctccttcacttgccaacattccaaccataaaggctctctatctcgctctctc 682  Q
    ||||||| |||||||| |||||||||  ||| |||| |||||| |||||||||||||||||    
T  898649 tctcacattctccttcccttgccaacgctcccaccaaaaaggccctctatctcgctctctc 898709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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