View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_70 (Length: 335)
Name: NF19358_low_70
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_70 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 17 - 324
Target Start/End: Original strand, 49865865 - 49866172
Alignment:
| Q |
17 |
gtttgttctgcatgggtagttgtgttctcaaatccatataaacatgtttgttgattggcaagtgtacctgagagccaaactttaagatcataagcaatct |
116 |
Q |
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| T |
49865865 |
gtttgttctgcatgggtagttgtgttctcaaatccatataaacatgtttgttgattggcaagtgtacctgagagccaaactttaagatcataagcaatct |
49865964 |
T |
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| Q |
117 |
catcaatttttctaatatcaaatttatccaatgtgtgaatagattgatgaatatcatcaactgcataaccaaggacttctttgcaaatatccatagcttg |
216 |
Q |
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| T |
49865965 |
catcaatttttctaatatcaaatttatccaatgagtgaatagattgatgaacatcatcaactgcataaccaaggacttctttgcaaatatccatagcttg |
49866064 |
T |
|
| Q |
217 |
ctttgtcatgtcattggtagctaattccttgtagagttttgagctatggatttgtttcgagagttcttcagctgttgctttgaatactgctttgatcaat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49866065 |
ctttgtcatgtcattggtagctaattccttgtagagttttgagttatggatttgtttcgagagttcttcagctgttgctttgaatactgctttgatcaat |
49866164 |
T |
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| Q |
317 |
tccttcat |
324 |
Q |
| |
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|||||||| |
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| T |
49866165 |
tccttcat |
49866172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 324
Target Start/End: Original strand, 49871796 - 49872103
Alignment:
| Q |
17 |
gtttgttctgcatgggtagttgtgttctcaaatccatataaacatgtttgttgattggcaagtgtacctgagagccaaactttaagatcataagcaatct |
116 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49871796 |
gtttgtcctgcatgggtagttgtgttctcaaatccatctaaacatgtttgttgattggcaagtgtacctgagagccaaactttaagatcataagcaatct |
49871895 |
T |
|
| Q |
117 |
catcaatttttctaatatcaaatttatccaatgtgtgaatagattgatgaatatcatcaactgcataaccaaggacttctttgcaaatatccatagcttg |
216 |
Q |
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|||||||||| ||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49871896 |
catcaattttgttaagatcaaatttatccaatgagtgaatagattgatgaacatcatcaactgcataaccaaggacttctttgcaaatatccatagcttg |
49871995 |
T |
|
| Q |
217 |
ctttgtcatgtcattggtagctaattccttgtagagttttgagctatggatttgtttcgagagttcttcagctgttgctttgaatactgctttgatcaat |
316 |
Q |
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||||||||||||||||||||| ||||||||||||||| ||||| | || ||||||||| |||||||||||||||||| |||||| || |||||||||| |
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| T |
49871996 |
ctttgtcatgtcattggtagccaattccttgtagagtgttgagttgtgtatttgtttcacgagttcttcagctgttgcattgaatgcttgtttgatcaat |
49872095 |
T |
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| Q |
317 |
tccttcat |
324 |
Q |
| |
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|||||||| |
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| T |
49872096 |
tccttcat |
49872103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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