View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_71 (Length: 329)
Name: NF19358_low_71
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_71 |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 16064217 - 16064522
Alignment:
| Q |
1 |
gctaaatgtgaaggttgtagtagaagactacgagttcttagaaaacatagtagtgatgaacgtacctaattgtccagtcactttgggtagaccttttctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
16064217 |
gctaaatgtgaaggttgtagtagaagactacgagttcttagaaaacatagtagtgatgaatgtacctaattgtccagtcactttgggtaaaccttttctg |
16064316 |
T |
|
| Q |
101 |
gccactgcacaggcacgaattaacttagaatataaggagattatgctgaaaacgtaaatacttgatacacaatatctcacaggataacataaggaaagat |
200 |
Q |
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| T |
16064317 |
gccact-cacaggcacgaattaacttagaatataaggagattatgttgcaaacgtaaatacttgatacacaatatctcacaggataaaataaggaaagat |
16064415 |
T |
|
| Q |
201 |
gcatgtaccgaatgccagtcaatggatgaagtcgatccttgtaaccccaatgaagacatagaacaacttcaagaagatcaagaggattatgaagtagcag |
300 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
16064416 |
gcaggtaccgaatgccagtcaatggatgaagtcgatccttgtaaccccaatgaagacatagaacaacttcaagaatatcaagaggattatgaagcagcag |
16064515 |
T |
|
| Q |
301 |
acaccaa |
307 |
Q |
| |
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||||||| |
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| T |
16064516 |
acaccaa |
16064522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 6040839 - 6040739
Alignment:
| Q |
5 |
aatgtgaaggttgtagtagaagactacgagttcttagaaaacatagtagtgatgaacgtacctaattgtccagtcactttgggtagaccttttctggcca |
104 |
Q |
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| T |
6040839 |
aatgtgcaggttgttgtagaagacttcaaattcttggcggacatagtagtgatggacaaaccagattgtccagtaactttgggcagaacttttcttgcca |
6040740 |
T |
|
| Q |
105 |
c |
105 |
Q |
| |
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| |
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| T |
6040739 |
c |
6040739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 3 - 267
Target Start/End: Original strand, 16782590 - 16782859
Alignment:
| Q |
3 |
taaatgtgaaggttgtagtagaagactacgagttcttagaaaacatagtagtgatgaacgtacctaattgtccagtcactttgggtagaccttttctggc |
102 |
Q |
| |
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||||||||||||||| | ||||||||| ||||||||||| | |||| ||||| ||| || ||| | |||||||||| ||| |||| ||||||||| |||| |
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| T |
16782590 |
taaatgtgaaggttgcaatagaagacttcgagttcttagcagacattgtagtaatggacatacatgattgtccagtaactctgggcagaccttttttggc |
16782689 |
T |
|
| Q |
103 |
cactgcacaggcacgaattaacttagaatataaggagattatgctg-----aaaacgtaaatacttgatacacaatatctcacaggataacataaggaaa |
197 |
Q |
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|| |||||| || ||||| || |||||||| |||||||| || || || | |||||||||||||||| | || || |||||||||||||||||| |
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| T |
16782690 |
cattgcacaagcccgaatcaaattagaatacaaggagatcgtgttgaaggcaagaggtaaatacttgatacatcaaatttcgcaggataacataaggaaa |
16782789 |
T |
|
| Q |
198 |
gatgcatgtaccgaatgccagtcaatggatgaagtcgatccttgtaaccccaatgaagacatagaacaac |
267 |
Q |
| |
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|||||| |||| |||||||| || |||| || |||||||||| ||| | |||||||||||||||||| |
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| T |
16782790 |
gatgcaggtactgaatgccatacagtggaggacgtcgatccttataaatctcatgaagacatagaacaac |
16782859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 3 - 147
Target Start/End: Original strand, 18385467 - 18385611
Alignment:
| Q |
3 |
taaatgtgaaggttgtagtagaagactacgagttcttagaaaacatagtagtgatgaacgtacctaattgtccagtcactttgggtagaccttttctggc |
102 |
Q |
| |
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||||||||||||||| |||| |||||| ||||||||||| | ||||| |||| ||| || ||||| ||||||||||||||||||| ||||||||| | || |
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| T |
18385467 |
taaatgtgaaggttgcagtataagacttcgagttcttagcatacatactagtaatggacatacctgattgtccagtcactttgggcagaccttttttagc |
18385566 |
T |
|
| Q |
103 |
cactgcacaggcacgaattaacttagaatataaggagattatgct |
147 |
Q |
| |
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||||||||| | ||||| ||||||||||| |||||||| ||||| |
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| T |
18385567 |
cactgcacaaacccgaatcaacttagaatacaaggagatcatgct |
18385611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 141
Target Start/End: Complemental strand, 25232862 - 25232726
Alignment:
| Q |
5 |
aatgtgaaggttgtagtagaagactacgagttcttagaaaacatagtagtgatgaacgtacctaattgtccagtcactttgggtagaccttttctggcca |
104 |
Q |
| |
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|||||| |||||| ||||||||||| | | ||||| || |||||||||| || || ||||| |||||||||||| | |||| |||||||| |||||| |
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| T |
25232862 |
aatgtgcaggttgcagtagaagacttcaaattcttggaggacatagtagtattggacatacctgattgtccagtcattatgggcagacctttcttggcca |
25232763 |
T |
|
| Q |
105 |
ctgcacaggcacgaattaacttagaatataaggagat |
141 |
Q |
| |
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||| ||| || ||||| ||||||||||| |||||||| |
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| T |
25232762 |
ctgtacatgcccgaatcaacttagaatacaaggagat |
25232726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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