View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_72 (Length: 329)
Name: NF19358_low_72
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_72 |
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Alignment Details
Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 177 - 313
Target Start/End: Complemental strand, 34123457 - 34123321
Alignment:
| Q |
177 |
cttcaataaaaggcttaggatgccacatttcaatctttcacaaaacatttatatgaagtcttaaattaaaatatcttggagcaaaacaaaccaaggttta |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34123457 |
cttcaataaaaggcttaggatgccacatttcaatctttcacaaaacatttatatgaagtcttaaattaaaatatcttggagcaaaacaaaccaaggttta |
34123358 |
T |
|
| Q |
277 |
tcaaattatttataatctagtagacaattggctttct |
313 |
Q |
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| T |
34123357 |
tcaaattatttataatctagtagacaattggctttct |
34123321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 34123623 - 34123523
Alignment:
| Q |
11 |
cataggcatcaaacttccctgaatttaatttataactgtttgattagaaaaattagtctttgatacaattaatgtaacacctaaacccaagttttagata |
110 |
Q |
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||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34123623 |
catagacatcaaacttctctgaatttaatttataactgtttgattagaaaaattagtctttgatacaattaatgtaacacctaaacccaagttttagata |
34123524 |
T |
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| Q |
111 |
c |
111 |
Q |
| |
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| |
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|
| T |
34123523 |
c |
34123523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 178 - 305
Target Start/End: Complemental strand, 34210717 - 34210591
Alignment:
| Q |
178 |
ttcaataaaaggcttaggatgccacatttcaatctttcacaaaacatttatatgaagtcttaaattaaaatatcttggagcaaaacaaaccaaggtttat |
277 |
Q |
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||||||||||||||| | ||||| |||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
34210717 |
ttcaataaaaggcttggtatgccccattacaatctttcataaaacatttagatgaagtcttaaattaaaatatcttggagcaaaaggaaccaatgtttat |
34210618 |
T |
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| Q |
278 |
caaattatttataatctagtagacaatt |
305 |
Q |
| |
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| |||||||||| ||||| ||||||||| |
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| T |
34210617 |
c-aattatttatgatctaatagacaatt |
34210591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 7e-40; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 178 - 313
Target Start/End: Original strand, 12018364 - 12018498
Alignment:
| Q |
178 |
ttcaataaaaggcttaggatgccacatttcaatctttcacaaaacatttatatgaagtcttaaattaaaatatcttggagcaaaacaaaccaaggtttat |
277 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| | |||||||||||| |
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| T |
12018364 |
ttcaataaaaggcttaggatgctacatttcaatctttcacaaaatatttatatgaagtctcaaattaaaatatcttggagcaagaggaaccaaggtttac |
12018463 |
T |
|
| Q |
278 |
caaattatttataatctagtagacaattggctttct |
313 |
Q |
| |
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|||||||| ||| | ||| | ||||||||||||||| |
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| T |
12018464 |
caaattatctatgacctaat-gacaattggctttct |
12018498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 178 - 313
Target Start/End: Original strand, 12018702 - 12018836
Alignment:
| Q |
178 |
ttcaataaaaggcttaggatgccacatttcaatctttcacaaaacatttatatgaagtcttaaattaaaatatcttggagcaaaacaaaccaaggtttat |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||| ||| | |
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| T |
12018702 |
ttcaataaaaggcttaggatgccacatttcaatttttcacaaaatatttatatgaagttttaaattaaaatatcttggagcaaaaggaaccaagattttt |
12018801 |
T |
|
| Q |
278 |
caaattatttataatctagtagacaattggctttct |
313 |
Q |
| |
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|||||||| || ||||| | ||||||||||||||| |
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| T |
12018802 |
caaattatctacgatctaat-gacaattggctttct |
12018836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 37 - 109
Target Start/End: Original strand, 12018222 - 12018295
Alignment:
| Q |
37 |
aatttataactgtttgattagaaaaattagtctttgatacaattaatgtaa-cacctaaacccaagttttagat |
109 |
Q |
| |
|
||||||| | |||||||||||| ||||||||||||||||| |||||||||| | ||||||||||| |||||||| |
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| T |
12018222 |
aatttattaatgtttgattagataaattagtctttgataccattaatgtaaccccctaaacccaaattttagat |
12018295 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 178 - 313
Target Start/End: Complemental strand, 14623266 - 14623131
Alignment:
| Q |
178 |
ttcaataaaaggcttaggatgccacatttcaatctttcacaaaacatttatatgaagtcttaaattaaaatatcttggagcaaaacaaaccaaggtttat |
277 |
Q |
| |
|
|||||| |||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||| ||||| |
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| T |
14623266 |
ttcaatgaaaggcttaggatgtcacatttcaacctttcacaaaacatttatatgaagaattaaattaaaatatcttgaagcaaaaggaaccaagatttat |
14623167 |
T |
|
| Q |
278 |
caaattatttataatctagtagacaattggctttct |
313 |
Q |
| |
|
|||||||||||| |||| ||||| ||| ||||||| |
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| T |
14623166 |
caaattatttatgatctgatagactatttgctttct |
14623131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 14623412 - 14623337
Alignment:
| Q |
37 |
aatttataactgtttgattagaaaaattagtctttgatacaattaatgtaaca-cctaaacccaagttttagatac |
111 |
Q |
| |
|
||||||||| ||||||||| || ||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |
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|
| T |
14623412 |
aatttataaatgtttgatttgataaattagtctttgataccattaatgtaacaccctaaacccaaattttagatac |
14623337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 181 - 277
Target Start/End: Complemental strand, 12599047 - 12598951
Alignment:
| Q |
181 |
aataaaaggcttaggatgccacatttcaatctttcacaaaacatttatatgaagtcttaaattaaaatatcttggagcaaaacaaaccaaggtttat |
277 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||| |||||| ||||||||||| ||| ||||||||||||||||||||||||| ||| ||||||||| |
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| T |
12599047 |
aataaaaggcttaggatgtcacattttaatcttccacaaatcatttatatgatgtcctaaattaaaatatcttggagcaaaaggaactaaggtttat |
12598951 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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