View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_75 (Length: 328)
Name: NF19358_low_75
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_75 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 11 - 314
Target Start/End: Original strand, 52296903 - 52297206
Alignment:
| Q |
11 |
atcaggggttggatccaaggcgtatagctaacttgttcctagatgctgaatgtgtaggggagaacgaaattaacaatgatttgtgtttcatactaaaatt |
110 |
Q |
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| T |
52296903 |
atcaggggttggatccaaggtgtatagctaacttgttcctagatgctgaatgtgtaggggagaacgaaattaacaatgatttgtgtttcatactaaaatt |
52297002 |
T |
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| Q |
111 |
acaaacagaacaacacatcctccaagcacaaagtacctccaatactgaaattgtaatgcacacaatattgggctactttagccaacgcacaggactactt |
210 |
Q |
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| T |
52297003 |
acaaacagaacaacacatcctccaagcacaaagtacctccaatactgaaattgtaatgcacacaatattgggctactttagccaacgcacaggactactt |
52297102 |
T |
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| Q |
211 |
gtcaaatttgaggacactaagttggtgagaatgaagacagttaaaggaaaagactccgtaatttgggaaacaaacattgagtctactattgatgattata |
310 |
Q |
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| T |
52297103 |
gtcaaatttgaggacactaagttggtgagaatgaagacagttaaaggaaaagactccgtaatttgggaaacaaacattgagtctactattgatgattata |
52297202 |
T |
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| Q |
311 |
aatg |
314 |
Q |
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|||| |
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| T |
52297203 |
aatg |
52297206 |
T |
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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 245
Target Start/End: Original strand, 6827384 - 6827445
Alignment:
| Q |
184 |
tactttagccaacgcacaggactacttgtcaaatttgaggacactaagttggtgagaatgaa |
245 |
Q |
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| T |
6827384 |
tactttagccaacgcacagggttacttgtcaaattcgaggataccaagttggtcagaatgaa |
6827445 |
T |
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