View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_78 (Length: 327)
Name: NF19358_low_78
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_78 |
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Alignment Details
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 224 - 314
Target Start/End: Complemental strand, 10319951 - 10319861
Alignment:
| Q |
224 |
ggtatatgacaagaagtactatatgaagaatatttgaagattttttgtcatgagacacgtataaagtgatgagtatacatagaaagaattg |
314 |
Q |
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| T |
10319951 |
ggtatatgacaagaagtaccatatgaagaatatttgaagattttttgtcatgagacacgtataaagtgatgagtatacatagaaagaattg |
10319861 |
T |
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Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 10320152 - 10320060
Alignment:
| Q |
11 |
ttatacttaacgtcagtataaataagttttacacataaatttaagatgtatttccataacatttaacgagttataaacgcatgacttatcata |
103 |
Q |
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| T |
10320152 |
ttatacataacgtcagtataaataagttttacacatacatttaagatgtatttccataacatttaacgagttaaaaacacatgatttatcata |
10320060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 120
Target Start/End: Complemental strand, 8279555 - 8279505
Alignment:
| Q |
70 |
catttaacgagttataaacgcatgacttatcatacttcattaattgatgtg |
120 |
Q |
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| T |
8279555 |
catttaatgagttaaaaacacatgacttgtcatacctcattaattgatgtg |
8279505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 120
Target Start/End: Original strand, 15995575 - 15995623
Alignment:
| Q |
71 |
atttaacgagttataaacgcatgacttatcatacttcattaattgatgtg |
120 |
Q |
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| T |
15995575 |
atttaatgagttaaaaacgcatgactt-tcatacttcattaattaatgtg |
15995623 |
T |
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