View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_8 (Length: 698)
Name: NF19358_low_8
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 634; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 634; E-Value: 0
Query Start/End: Original strand, 16 - 685
Target Start/End: Original strand, 40623405 - 40624074
Alignment:
| Q |
16 |
taaacaacatagaaacaatggatggttcaattaggaggtttggagattacagaacaaaaggagatttttctgttgatttgaagcttggccatgttggaaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40623405 |
taaacaacatagaaacaatggatggttcaattaggaggtttggagattacagaacaaaaggagatttttctgttgatttgaagcttggccatgttggaaa |
40623504 |
T |
|
| Q |
116 |
ttctagcactgaatcagggctaacaaagtccaaagatgttggtggatttaccaaaatgacatcttcatcatcatcaacttcagggtcatctaagagagct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40623505 |
ttctagcactgaatcagggctaacaaagtccaaagatgttggtggatttaccaaaatgacatcttcatcatcatcaacttcagggtcatctaagagagct |
40623604 |
T |
|
| Q |
216 |
agagctattaacaatgggactcagatagtttcatgtcttgtggatggttgtcaagctgatcttagtaactgtagagactatcataggcgtcataaggtct |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40623605 |
agagctattaacaatgggactcagatagtttcatgtcttgtggatggttgtcaagctgatcttagtaactgtagagactatcataggcgtcataaggtct |
40623704 |
T |
|
| Q |
316 |
gtgaacttcattccaagactgcacaggtcacaattggtggacataagcaaaggttctgccagcaatgtagcaggttcctttttcttatccataagctttt |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40623705 |
gtgaacttcattccaagactgcacaggtcacaattggtggacataagcaaaggttctgccagcaatgtagcaggttcttttttcttatccataagctttt |
40623804 |
T |
|
| Q |
416 |
tgtgtttcactttagtgtgctaatgagnnnnnnnncctcttaattaatgcatttgtttattgtacctattaaacttctaaattatgtgcatgtattccta |
515 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40623805 |
tgtgtttcactttagtgtgctaatgagttttttttcctcttaattaatgcatttgtttattgtacctagtaaacttctaaattatgtgcatgtattccta |
40623904 |
T |
|
| Q |
516 |
ttattcatgctaacttcataagtattctagctaattgctttttattatttttagaatcttaatttagccttcataagaagaggtaaaagcacaatcctta |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40623905 |
ttattcatgctaacttcataagtattctagctaattgctttttattatttttagaatcttaatttagccttcataagaagaggtaaaagcacaatcctta |
40624004 |
T |
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| Q |
616 |
acaagattattaaaacacttgttaacgggttaattcagttaacaaaatgcaaattacagtcaacacatat |
685 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40624005 |
acaagattattaaaacacttgttaacgggttaattcagttaacaaaatgcaaattacagtcaacatatat |
40624074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 81 - 372
Target Start/End: Original strand, 27511834 - 27512125
Alignment:
| Q |
81 |
ttttctgttgatttgaagcttggccatgttggaaattctagcactgaatcagggctaacaaagtccaaagatgttggtggatttaccaaaatgacatctt |
180 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
27511834 |
ttttttgttgatttgaagcttggccatgttggaaattctagcgctgaatcagggcttacaaagtccaaagatgttggtggatttaccaaaataacatctt |
27511933 |
T |
|
| Q |
181 |
catcatcatcaacttcagggtcatctaagagagctagagctattaacaatgggactcagatagtttcatgtcttgtggatggttgtcaagctgatcttag |
280 |
Q |
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| T |
27511934 |
catcatcttcaacttcagggtcatctaagaaagctagagctattaacaatggaactcagatagtttcaagtcttgcggatggttgtcaagctgatcttag |
27512033 |
T |
|
| Q |
281 |
taactgtagagactatcataggcgtcataaggtctgtgaacttcattccaagactgcacaggtcacaattggtggacataagcaaaggttct |
372 |
Q |
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| T |
27512034 |
taactatagaggatatcatatgcgccataaggtctgcaaacttcattcaaagacttcacaggtgacacttggtggacataagcaaaggttct |
27512125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 79 - 206
Target Start/End: Complemental strand, 27270525 - 27270398
Alignment:
| Q |
79 |
atttttctgttgatttgaagcttggccatgttggaaattctagcactgaatcagggctaacaaagtccaaagatgttggtggatttaccaaaatgacatc |
178 |
Q |
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|||||| || ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
27270525 |
atttttttgctgatttgaagcttggccatgttggaaattctagcactaaatcagggcttacaaagtccaaagatgttggtggatttaccaaaatgaaatc |
27270426 |
T |
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| Q |
179 |
ttcatcatcatcaacttcagggtcatct |
206 |
Q |
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||||||||| |||||||||||||||||| |
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| T |
27270425 |
ttcatcatcttcaacttcagggtcatct |
27270398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 242 - 390
Target Start/End: Original strand, 45410581 - 45410729
Alignment:
| Q |
242 |
agtttcatgtcttgtggatggttgtcaagctgatcttagtaactgtagagactatcataggcgtcataaggtctgtgaacttcattccaagactgcacag |
341 |
Q |
| |
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|||||| |||||||||||||| || | ||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| || || |
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| T |
45410581 |
agtttcttgtcttgtggatgggtgcaattctgatcttagtaattgtagagattatcataggcgtcataaggtttgtgaacttcattccaagactccagag |
45410680 |
T |
|
| Q |
342 |
gtcacaattggtggacataagcaaaggttctgccagcaatgtagcaggt |
390 |
Q |
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|| |||||| |||| | ||| |||||||||||||| || |||||||||| |
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| T |
45410681 |
gttacaatttgtggccttaaacaaaggttctgccaacagtgtagcaggt |
45410729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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