View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_83 (Length: 312)
Name: NF19358_low_83
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_83 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 10 - 295
Target Start/End: Complemental strand, 1790189 - 1789904
Alignment:
| Q |
10 |
attatactagacatcacatatcagaaaaattgaaaatgagagacagaaaccatgataaaatttgttcgcactaaccctccttcactgtgaactccacttt |
109 |
Q |
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| T |
1790189 |
attatattagacatcacatatcagaaaaattgaaaatgagagacagaaaccatgataaaatttgttcgcactaaccctccttcactgtgaactccacttt |
1790090 |
T |
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| Q |
110 |
atcagattttgctactagtgttcatcaacaagatgcgcttcataattcactgcaacaacagaagggtattttatagttatcacagtcaaataatagagtc |
209 |
Q |
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| T |
1790089 |
atcagattttgctactagtgttcatcaacaagatgcgcttcataattcactgcaacaacagaagggtattttatagttatcacagtcaaataatagagtc |
1789990 |
T |
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| Q |
210 |
cctcaatgaaaaatggaatatactcgtaatatgtttacctaaaacttcgtcaagatccttggagttttcccatttccccccttctt |
295 |
Q |
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| T |
1789989 |
cctcaatgaaaaatggaatatactcgtaatatgtttacctaaaacttcgtcaagatccttggagttttcccatttccccccttctt |
1789904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 49 - 290
Target Start/End: Original strand, 14389596 - 14389839
Alignment:
| Q |
49 |
gagacagaaaccatgataaaatttgttcgcactaaccctccttcactgtgaactccactttatcagattttgctactagtgtt-catcaacaagatgcgc |
147 |
Q |
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| T |
14389596 |
gagacagaaatcatgataaaatttgttcacactgaccctccttcactgtgaactccactccatcagattttgctactagtgttccatcatcaagatgcgc |
14389695 |
T |
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| Q |
148 |
ttcataattcactgcaacaacagaagggtattttatagtta--tcacagtcaaataatagagtccctcaatgaaaaatggaatatactcgtaatatgttt |
245 |
Q |
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| T |
14389696 |
ttcatacttaactgcaacaa-acaagtgcattttatagttaatacaaaatcaaataatagagtcattcaatgaaaaatgaaagatactcgtaatatgttt |
14389794 |
T |
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| Q |
246 |
acctaaaacttcgtcaagatccttggagttttcccatttcccccc |
290 |
Q |
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| T |
14389795 |
acctaacacttcatcaagatccttggggttttcccatttctcccc |
14389839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 32 - 290
Target Start/End: Original strand, 3496007 - 3496268
Alignment:
| Q |
32 |
agaaaaattgaaaatgagagacagaaaccatgataaaatttgttcgcactaaccctccttcactgtgaactccactttatcagattttgctactagtgtt |
131 |
Q |
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| T |
3496007 |
agaaaatttgaaaacgagagacagaaaccaagataaaattagttcacactgaccctccttcactgtgaactccactccatcagattttgctactagtgtt |
3496106 |
T |
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| Q |
132 |
-catcaacaagatgcgcttcataattcactgcaacaacagaagggtattttatagttatcac--agtcaaataatagagtccctcaatgaaaaatggaat |
228 |
Q |
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| T |
3496107 |
ccatcatcaagacgcgcttcatacttaactgcatcaacacaagtgcattttatggttaacacaaactcaaataatcaagtcattcaatgaaaaatgaaag |
3496206 |
T |
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| Q |
229 |
atactcgtaatatgtttacctaaaacttcgtcaagatccttggagttttcccatttcccccc |
290 |
Q |
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| T |
3496207 |
atactcgtaatatgtttacctaaaacttcatcaagatcctttgggttttcccatttctcccc |
3496268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 124
Target Start/End: Original strand, 3506611 - 3506639
Alignment:
| Q |
96 |
gtgaactccactttatcagattttgctac |
124 |
Q |
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| T |
3506611 |
gtgaactccactttatcagattttgctac |
3506639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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