View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19358_low_85 (Length: 311)

Name: NF19358_low_85
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19358_low_85
NF19358_low_85
[»] chr1 (3 HSPs)
chr1 (17-299)||(46445608-46445890)
chr1 (43-296)||(46672280-46672533)
chr1 (38-296)||(5054384-5054643)
[»] chr8 (5 HSPs)
chr8 (41-184)||(9841625-9841768)
chr8 (38-186)||(9846659-9846805)
chr8 (35-252)||(9860268-9860482)
chr8 (113-182)||(9902659-9902728)
chr8 (35-83)||(27360589-27360637)
[»] chr3 (2 HSPs)
chr3 (120-252)||(49386002-49386133)
chr3 (114-187)||(7256554-7256627)
[»] chr5 (4 HSPs)
chr5 (103-203)||(4145571-4145671)
chr5 (113-296)||(39576071-39576254)
chr5 (113-296)||(39572065-39572248)
chr5 (117-187)||(2326641-2326711)
[»] chr6 (1 HSPs)
chr6 (116-185)||(112940-113009)


Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 17 - 299
Target Start/End: Original strand, 46445608 - 46445890
Alignment:
Q  17 acttttagtagttggctctcgatgtactatagcacgtgttccccacactgcaaaattcaagttgttccttttggatgtccttgagatttcgggtaatttt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46445608 acttttagtagttggctctcgatgtactatagcacgtgttccccacactgcaaaattcaagttgttccttttggatgtccttgagatttcgggtaatttt 46445707  T
Q  117 tggtatgttttctatgtgttaagaattggaatagataattcatggaaagagatagctagaaaagaagctcctcgtgattggttttttacatggcaaccac 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46445708 tggtatgttttctatgtgttaagaattggaatagataattcatggaaagagatagctagaaaagaagctcctcgtgattggttttttacatggcaaccac 46445807  T
Q  217 tttatagtggaggcaatgatcttttttggataacaattgatgatataattgtaatggatgttgatagagaaattattgtagaa 299  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46445808 tttatagtggaggcaatgatctttactggataacaattgatgatataattgtaatggatgttgatagagaaattattgtagaa 46445890  T

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Target: chr1; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 43 - 296
Target Start/End: Complemental strand, 46672533 - 46672280
Alignment:
Q  43 ctatagcacgtgttccccacactgcaaaattcaagttgttccttttggatgtccttgagatttcgggtaatttttggtatgttttctatgtgttaagaat 142  Q
    |||||||||||||||||  || || ||| |||||||||||| ||||||||||||||||||||||||||  |||||||  ||||||||||||| | |||||    
T  46672533 ctatagcacgtgttcccagcattgaaaatttcaagttgttctttttggatgtccttgagatttcgggtgctttttggcgtgttttctatgtgctgagaat 46672434  T
Q  143 tggaatagataattcatggaaagagatagctagaaaagaagctcctcgtgattggttttttacatggcaaccactttatagtggaggcaatgatcttttt 242  Q
    | ||||||||||||||||||||||||||||||||||||||||||  | | || ||  |||| |||||||| |||||||||||||||||||||||||||      
T  46672433 tagaatagataattcatggaaagagatagctagaaaagaagctcgccataatcggcattttccatggcaatcactttatagtggaggcaatgatctttac 46672334  T
Q  243 tggataacaattgatgatataattgtaatggatgttgatagagaaattattgta 296  Q
    || ||||||| ||||||  ||||||| |||||||||||||||||||||||||||    
T  46672333 tgaataacaaatgatgaagtaattgtgatggatgttgatagagaaattattgta 46672280  T

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Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 38 - 296
Target Start/End: Complemental strand, 5054643 - 5054384
Alignment:
Q  38 atgtactatagcacgtgttccccacactgcaaaattcaagttgttccttttggatgtccttgagatttcgggtaatttttggtatgttttctatgtgtta 137  Q
    ||||||||||||||||||||| | |||| | ||||||||| | ||| ||||  ||||  ||| |||||| | |  ||| |||||||||||||||||| ||    
T  5054643 atgtactatagcacgtgttcctctcacttccaaattcaagcttttctttttacatgtttttgcgatttctgcttctttctggtatgttttctatgtgcta 5054544  T
Q  138 agaattggaatagataattcatggaaagagatagctag-aaaagaagctcctcgtgattggttttttacatggcaaccactttatagtggaggcaatgat 236  Q
    |||||  |||||||||| || ||||| ||||||||||| |||| ||||||| | | |  ||  ||||    |||||  ||||||||||||||||||||||    
T  5054543 agaataagaatagataactcgtggaacgagatagctagaaaaaaaagctccccttcaagggaatttttttcggcaaatactttatagtggaggcaatgat 5054444  T
Q  237 cttttttggataacaattgatgatataattgtaatggatgttgatagagaaattattgta 296  Q
    |||| ||||||||||| |||| |  | ||||| ||||||||||| |  ||||||||||||    
T  5054443 ctttattggataacaaatgataaagtgattgtgatggatgttgacaaggaaattattgta 5054384  T

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Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 41 - 184
Target Start/End: Original strand, 9841625 - 9841768
Alignment:
Q  41 tactatagcacgtgttccccacactgcaaaattcaagttgttccttttggatgtccttgagatttcgggtaatttttggtatgttttctatgtgttaaga 140  Q
    |||||||||||||||||| | |||| | ||||||||| | |||||| | |||||||||||| ||||||||  || ||||||||||||||||||| | |||    
T  9841625 tactatagcacgtgttcctcgcacttccaaattcaagcttttccttatagatgtccttgaggtttcgggtgcttgttggtatgttttctatgtgctgaga 9841724  T
Q  141 attggaatagataattcatggaaagagatagctagaaaagaagc 184  Q
    || |||||||||||| |||||||||||||||||| |||||||||    
T  9841725 atcggaatagataatgcatggaaagagatagctaaaaaagaagc 9841768  T

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Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 38 - 186
Target Start/End: Original strand, 9846659 - 9846805
Alignment:
Q  38 atgtactatagcacgtgttccccacactgcaaaattcaagttgttccttttggatgtccttgagatttcgggtaatttttggtatgttttctatgtgtta 137  Q
    ||||||||||||||||||||| | ||| | |||||||||| | |||||| ||||||||||   | |||| |||  ||| |||||||||||||  ||| ||    
T  9846659 atgtactatagcacgtgttcctcgcaccggaaaattcaagcttttccttgtggatgtcctcatggtttcaggtgctttctggtatgttttct--gtgcta 9846756  T
Q  138 agaattggaatagataattcatggaaagagatagctagaaaagaagctc 186  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  9846757 agaattggaatagataactcatggaaagagataactagaaaagaagctc 9846805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 35 - 252
Target Start/End: Original strand, 9860268 - 9860482
Alignment:
Q  35 tcgatgtactatagcacgtgttccccacactgcaaaattcaagttgttccttttggatgtccttgagatttcgggtaatttttggtatgttttctatgtg 134  Q
    |||||||||||||| || |||||| | |||||| || |||||| | ||| || | ||||||| | |||||    ||  ||||||||||||||||||||||    
T  9860268 tcgatgtactatagtacatgttcctcgcactgccaacttcaagcttttctttgtagatgtccataagattcatagttctttttggtatgttttctatgtg 9860367  T
Q  135 ttaagaattggaatagataattcatggaaagagatagctagaaaagaagctcctcgtgattggttttttacatggcaaccactttatagtggaggcaatg 234  Q
      ||||||||||||||||  ||||||||| | |||||||||||||||| ||| ||   |    | |||   ||||||| |||||||||||||||||||||    
T  9860368 caaagaattggaatagatggttcatggaacgtgatagctagaaaagaaactcttcaacaacattattt---atggcaaacactttatagtggaggcaatg 9860464  T
Q  235 atcttttttggataacaa 252  Q
    || ||| |||||||||||    
T  9860465 atatttattggataacaa 9860482  T

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Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 9902659 - 9902728
Alignment:
Q  113 tttttggtatgttttctatgtgttaagaattggaatagataattcatggaaagagatagctagaaaagaa 182  Q
    ||||||||||||||||||| || ||||||| ||||||||||| ||||||| |||||||||||||||||||    
T  9902659 tttttggtatgttttctatatgctaagaatcggaatagataactcatggagagagatagctagaaaagaa 9902728  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 27360589 - 27360637
Alignment:
Q  35 tcgatgtactatagcacgtgttccccacactgcaaaattcaagttgttc 83  Q
    ||||| ||||||||||||||||||| |||||||  ||||||||||||||    
T  27360589 tcgatctactatagcacgtgttcccaacactgcccaattcaagttgttc 27360637  T

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Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 120 - 252
Target Start/End: Complemental strand, 49386133 - 49386002
Alignment:
Q  120 tatgttttctatgtgttaagaattggaatagataattcatggaaagagatagctagaaaagaagctcctcgtgattggttttttacatggcaaccacttt 219  Q
    ||||||||||||||| |||||||||||||| |||| |||||||||||||||| ||||||||||||||| | | |||||| |||   || | |||||| ||    
T  49386133 tatgttttctatgtgctaagaattggaatacataactcatggaaagagataggtagaaaagaagctccccttaattggtgtttgttatagaaaccac-tt 49386035  T
Q  220 atagtggaggcaatgatcttttttggataacaa 252  Q
    |||||||||| ||||||||||  ||||||||||    
T  49386034 atagtggaggaaatgatctttactggataacaa 49386002  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 187
Target Start/End: Original strand, 7256554 - 7256627
Alignment:
Q  114 ttttggtatgttttctatgtgttaagaattggaatagataattcatggaaagagatagctagaaaagaagctcc 187  Q
    ||||||||||||| ||||||  ||||||||||| ||||||| ||||||||||| ||||||||||||||||||||    
T  7256554 ttttggtatgtttactatgtactaagaattggagtagataactcatggaaagaaatagctagaaaagaagctcc 7256627  T

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Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 103 - 203
Target Start/End: Original strand, 4145571 - 4145671
Alignment:
Q  103 tttcgggtaatttttggtatgttttctatgtgttaagaattggaatagataattcatggaaagagatagctagaaaagaagctcctcgtgattggttttt 202  Q
    ||||||||  || ||||||||| ||||||||| | ||||||||| ||||||  |||||||||||||||||| ||||||||||||||||||| ||||||||    
T  4145571 tttcgggtgcttattggtatgtattctatgtgcttagaattggagtagatagctcatggaaagagatagcttgaaaagaagctcctcgtgaatggttttt 4145670  T
Q  203 t 203  Q
    |    
T  4145671 t 4145671  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 113 - 296
Target Start/End: Original strand, 39576071 - 39576254
Alignment:
Q  113 tttttggtatgttttctatgtgttaagaattggaatagataattcatggaaagagatagctagaaaagaagctcctcgtgattggttttttacatggcaa 212  Q
    ||||||||||||||||||||   | ||||||||||| ||||| || |||||||| |||||||||||||||||||| | | |  |||| | |     || |    
T  39576071 tttttggtatgttttctatgcacttagaattggaattgataactcgtggaaagaaatagctagaaaagaagctccccttaaggggttctcttttcagcga 39576170  T
Q  213 ccactttatagtggaggcaatgatcttttttggataacaattgatgatataattgtaatggatgttgatagagaaattattgta 296  Q
    ||| ||||||||||||||||||||||||  |||||||||| ||| ||  | ||||| |||||||||||||  ||||||||||||    
T  39576171 ccaatttatagtggaggcaatgatctttactggataacaaatgaggaagtgattgtgatggatgttgataaggaaattattgta 39576254  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 113 - 296
Target Start/End: Original strand, 39572065 - 39572248
Alignment:
Q  113 tttttggtatgttttctatgtgttaagaattggaatagataattcatggaaagagatagctagaaaagaagctcc---tcgtgattggttttttacatgg 209  Q
    |||||||||||||||||||||  ||||||||||| | ||||| |||||| |||| ||||||||||||||||| ||   | | || |  | |||||    |    
T  39572065 tttttggtatgttttctatgttctaagaattggagttgataactcatggtaagaaatagctagaaaagaagcacccttttgggagttctctttta---ag 39572161  T
Q  210 caaccactttatagtggaggcaatgatcttttttggataacaattgatgatataattgtaatggatgttgatagagaaattattgta 296  Q
    |||||| ||||||||||||| |||||||||| ||||||||||| ||| ||  | ||||| |||||||||||||  ||||||||||||    
T  39572162 caaccaatttatagtggaggtaatgatctttattggataacaaatgaggaagtgattgtgatggatgttgataaggaaattattgta 39572248  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 187
Target Start/End: Complemental strand, 2326711 - 2326641
Alignment:
Q  117 tggtatgttttctatgtgttaagaattggaatagataattcatggaaagagatagctagaaaagaagctcc 187  Q
    ||||||||||| |||||| |||||||||||| |||| || ||||||| ||||||| |||||||||||||||    
T  2326711 tggtatgttttttatgtgctaagaattggaaaagattatacatggaatgagatagttagaaaagaagctcc 2326641  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 185
Target Start/End: Complemental strand, 113009 - 112940
Alignment:
Q  116 ttggtatgttttctatgtgttaagaattggaatagataattcatggaaagagatagctagaaaagaagct 185  Q
    ||||||||||||||| ||  ||| ||||||| | |||||  ||||||||||||||||||||||| |||||    
T  113009 ttggtatgttttctacgtcctaacaattggagttgataacacatggaaagagatagctagaaaaaaagct 112940  T

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