View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_87 (Length: 309)
Name: NF19358_low_87
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_87 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 8 - 309
Target Start/End: Original strand, 10332692 - 10332993
Alignment:
| Q |
8 |
tgagatgaatcaaacatggaactgatcaagcttcctggtggaaagaaagcaattgatttaaaatgggtttttaagctgaaattgaaccttgaagggaaga |
107 |
Q |
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| T |
10332692 |
tgagaagaatcaaacatggaactaatcaagcttcctggtggaaagaaagcaattgatttcaaatgggtttttaagctgaaattgaaccttgaagggaaga |
10332791 |
T |
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| Q |
108 |
ttgtgaagcacaaagccaggcttgtagctaaagaattcttatggaaggaaggatttaactatactaaagttttctcaccagttgcatgacatgaaaccat |
207 |
Q |
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| T |
10332792 |
ttgtgaagcacaaagccaggcttgtagctaaagaattcttatggaaggaaggatttaactatactaaagttttctcaccagttgcatgacatgaaaccat |
10332891 |
T |
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| Q |
208 |
caggttagtcattgtagtatagcaacaagcaaagcatggctactatatcacttagatgtaaaatcagcctttctgaatcaaagggaaagaagatagagtg |
307 |
Q |
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| T |
10332892 |
caggttagtcattgtagtatagcaacaagcaaagcatggctactatatcacttagatgtaaaatcagcctttctgaatcaaagggaaagaagatagagtg |
10332991 |
T |
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| Q |
308 |
tt |
309 |
Q |
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| T |
10332992 |
tt |
10332993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 48 - 193
Target Start/End: Complemental strand, 6372642 - 6372497
Alignment:
| Q |
48 |
gaaagaaagcaattgatttaaaatgggtttttaagctgaaattgaaccttgaagggaagattgtgaagcacaaagccaggcttgtagctaaagaattctt |
147 |
Q |
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| T |
6372642 |
gaaagaaagcaatagatgtcaaatgggtcttcaagtttaaattgaaccctgacgggaagattgtgaatcaaaaagcaagacttgtggctagaggtttctt |
6372543 |
T |
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| Q |
148 |
atggaaggaaggatttaactatactaaagttttctcaccagttgca |
193 |
Q |
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| T |
6372542 |
atagaatgaaggctttgattacactgaagttttctcaccaattgca |
6372497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 50 - 210
Target Start/End: Original strand, 14639725 - 14639885
Alignment:
| Q |
50 |
aagaaagcaattgatttaaaatgggtttttaagctgaaattgaaccttgaagggaagattgtgaagcacaaagccaggcttgtagctaaagaattcttat |
149 |
Q |
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| T |
14639725 |
aagaaagcaatagatgttaaatgggtctttaagttgaaattgaatcctgaagggaagattgtgaagcacaaagctagacttgtggctagagttttcttga |
14639824 |
T |
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| Q |
150 |
ggaaggaaggatttaactatactaaagttttctcaccagttgcatgacatgaaaccatcag |
210 |
Q |
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| T |
14639825 |
agaaggaaggctttgattatactgaagtgttctcaccagttccaagacatgaaaccatcag |
14639885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 210
Target Start/End: Complemental strand, 12196666 - 12196483
Alignment:
| Q |
26 |
gaactgatcaagcttcctggtggaaagaaagcaattgatttaaaatgggtttttaagctgaaattgaaccttgaagggaagattgtgaagcacaaagcca |
125 |
Q |
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| T |
12196666 |
gaactgataaagcttcgagatggaaaaaaggcaatagatataaaattggttttcaagttaaaatttaatcaagaagggaagattgtgaatcacgaagcaa |
12196567 |
T |
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| Q |
126 |
ggcttgtagctaaagaattcttatggaaggaaggatttaactatactaaagttttctcaccagttgcatgacatgaaaccatcag |
210 |
Q |
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| T |
12196566 |
ggcttttggctagaggtttatt-tagaaggaaggttttgattacactaaagttttctcaccagatgcaagacatgaaactatcag |
12196483 |
T |
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