View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_88 (Length: 308)
Name: NF19358_low_88
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_88 |
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Alignment Details
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 118 - 303
Target Start/End: Original strand, 44557525 - 44557707
Alignment:
| Q |
118 |
agacttacctacctctcctgagaggaggtgttcattagcacataccctatagataagacctttttcgtgtacttaaacaatttcccttattttcattgac |
217 |
Q |
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| T |
44557525 |
agacttacctacctctctcaaaaagaggtgttcattagcatataccctacagataagacctttttcgtgtacttgaacaatttcccttattttcattgac |
44557624 |
T |
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| Q |
218 |
tgaacgtggactgaggttatgaaataactggtcttataagttataataatgatcatctaaaattaaaataaggaagttcatctcac |
303 |
Q |
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| T |
44557625 |
tgaacgtggactgaggttatgaaataactggtcttataagtt---ataatcatcatctaaaattaaaataaggaagttcatttcac |
44557707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 44557425 - 44557462
Alignment:
| Q |
18 |
aggtcataatacacatatttgtgatgaattcgctagta |
55 |
Q |
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| T |
44557425 |
aggtcataatacacatatttgtgatgaattcgctagta |
44557462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 256
Target Start/End: Original strand, 44550966 - 44551024
Alignment:
| Q |
198 |
tttcccttattttcattgactgaacgtggactgaggttatgaaataactggtcttataa |
256 |
Q |
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| T |
44550966 |
tttcccttattttcactgaccgagagtggactgaagttatgaagtaacttgtcttataa |
44551024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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