View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_9 (Length: 598)
Name: NF19358_low_9
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 18 - 582
Target Start/End: Complemental strand, 44507521 - 44506965
Alignment:
| Q |
18 |
atttaattatcgttctatttggcataaaattgaggtttctccttaacaactccggctatgttctaaacgatttctcaattccctattccgtacgtatcac |
117 |
Q |
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| T |
44507521 |
atttagttctcgttctatttggcattaaattgaggtttctccttaacaactcctgctatgttctaaacgatttctcaattccctattccgtacgtatcac |
44507422 |
T |
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| Q |
118 |
tatgttactcgtgatcaaaatactttgtcatgtgtagtttaatcgaatgtaatggtttgttgctttgttagaatatatgtttcatctctctatggattgg |
217 |
Q |
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| T |
44507421 |
tatgttactcgtgatcaaaatactttgtcatgtgtagtttcatcgaatgtaatggtttgttgctttgttacaatatatgtctcatctctctatggattgg |
44507322 |
T |
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| Q |
218 |
ttgaaaagctacacatggataacagtggagtatctccccatactttagcttgcatgtttgttgctaaaattgcatattgttctcttatttcggccctcaa |
317 |
Q |
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| T |
44507321 |
ttgaaaagctacacatggataacagtggagtatctccccatactttagcttgcatgtttgttgctaaaattgcatattgttctcttatttcggccctcaa |
44507222 |
T |
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| Q |
318 |
ttgagactctccctccctcccctatacacacgttcatagggtttgacatgtaatattaaccgaaccaaaccattttaggatgattcaagttcagtccaaa |
417 |
Q |
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| T |
44507221 |
ttgagactctccctccctcc--------cacgttcatagggtttgacatgtaatattaaccgaaccaaaccattttaggataattcaagttcagtccaaa |
44507130 |
T |
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| Q |
418 |
ctaaaataaaaacctaaaccaaatattttgagtcgggttgggtcatcgaattaatcaggttgacttgtaccatgagcaacctcaaaaattcatgatgttt |
517 |
Q |
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| T |
44507129 |
ctaaaataaaaacctaaaccaaatattttgagtcgggttgggtcatcgaattaatcaggttgactcgtaccataagcaacctcaaaaattcatgatgttt |
44507030 |
T |
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| Q |
518 |
aatgtttgacacatccatataggatttttccatgcacaaattaattttgtttgtaagggtgtaat |
582 |
Q |
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| T |
44507029 |
aatgtttgacacatccatacaggatttttccatgcacaaattaattttgtttgtaagggtgtaat |
44506965 |
T |
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