View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19358_low_94 (Length: 297)

Name: NF19358_low_94
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19358_low_94
NF19358_low_94
[»] chr5 (5 HSPs)
chr5 (1-279)||(12596987-12597262)
chr5 (115-221)||(30419705-30419811)
chr5 (114-191)||(20813687-20813764)
chr5 (114-191)||(20840126-20840203)
chr5 (114-191)||(15804949-15805026)
[»] chr8 (7 HSPs)
chr8 (141-272)||(31177715-31177846)
chr8 (114-265)||(3319567-3319718)
chr8 (115-262)||(3405766-3405913)
chr8 (114-230)||(3365986-3366102)
chr8 (114-229)||(3396848-3396963)
chr8 (114-191)||(3389359-3389436)
chr8 (114-191)||(3430248-3430327)
[»] chr7 (1 HSPs)
chr7 (114-173)||(8370224-8370283)
[»] chr3 (1 HSPs)
chr3 (115-262)||(6903920-6904067)
[»] chr2 (1 HSPs)
chr2 (114-173)||(14765836-14765895)
[»] scaffold0468 (1 HSPs)
scaffold0468 (116-229)||(3344-3457)


Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 12596987 - 12597262
Alignment:
Q  1 gtggcttcatgtaacaactcaagtctttggtgaagttagttcatgatatagaagaagaagaaagaggaacataatgataaaattcactatccagatttac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||| ||||||||||||||||||||||||    
T  12596987 gtggcttcatgtaacaactcaagtctttggtgaagttagttcatgatatagaa---gaagaaagaggaacataataataaaattcactatccagatttac 12597083  T
Q  101 aaggaagacacagtgatgaagattggcaaggtttaatattaaattttggagttggtgacaatgtggagattttcgtagctattggacatggcttgactat 200  Q
    ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12597084 aagcaagacacagtgatgaagattggcaaggtttaatatcaaattttggagttggtgacaatgtggagattttcgtagctattggacatggcttgactat 12597183  T
Q  201 tagagaaacaggtgtctatctagtatatgactagtcgaatgctttggaaattgaggcatcaaatatgatggaggaagtt 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  12597184 tagagaaacaggtgtctatctagtatatgactagtcgaatgctttggaaattgagccatcaaatatgatggaggaagtt 12597262  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 221
Target Start/End: Original strand, 30419705 - 30419811
Alignment:
Q  115 gatgaagattggcaaggtttaatattaaattttggagttggtgacaatgtggagattttcgtagctattggacatggcttgactattagagaaacaggtg 214  Q
    |||||||||||||| ||| ||| || |||||| |||| |||||||||| |||||||||| |||||| | ||  ||||  ||||| ||| |||||||||||    
T  30419705 gatgaagattggcagggtgtaaaatcaaatttaggagctggtgacaatatggagatttttgtagctttagggaatggtatgactgttaaagaaacaggtg 30419804  T
Q  215 tctatct 221  Q
    || ||||    
T  30419805 tccatct 30419811  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 20813687 - 20813764
Alignment:
Q  114 tgatgaagattggcaaggtttaatattaaattttggagttggtgacaatgtggagattttcgtagctattggacatgg 191  Q
    ||||||||||||| ||||| || | | ||||||   |||||||||||||||||||||||| ||||||||||| |||||    
T  20813687 tgatgaagattgggaaggtgtagtgtcaaatttaaaagttggtgacaatgtggagatttttgtagctattgggcatgg 20813764  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 20840126 - 20840203
Alignment:
Q  114 tgatgaagattggcaaggtttaatattaaattttggagttggtgacaatgtggagattttcgtagctattggacatgg 191  Q
    ||||||||||||| ||||| || | | ||||||   |||||||||||||||||||||||| ||||||||||| |||||    
T  20840126 tgatgaagattgggaaggtgtattgtcaaatttaaaagttggtgacaatgtggagatttttgtagctattgggcatgg 20840203  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 15804949 - 15805026
Alignment:
Q  114 tgatgaagattggcaaggtttaatattaaattttggagttggtgacaatgtggagattttcgtagctattggacatgg 191  Q
    ||||||||||||||||||  || | | |||||| ||||||||| |||||||||| || || |||||| |||| |||||    
T  15804949 tgatgaagattggcaaggcatagtgtcaaatttaggagttggtaacaatgtggaaatatttgtagctgttgggcatgg 15805026  T

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Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 141 - 272
Target Start/End: Original strand, 31177715 - 31177846
Alignment:
Q  141 aaattttggagttggtgacaatgtggagattttcgtagctattggacatggcttgactattagagaaacaggtgtctatctagtatatgactagtcgaat 240  Q
    ||||||||| |||||||||||||||||| |||| ||||||||||| ||||| || ||| |||  || |||| ||||||| ||||||||||| |||| |||    
T  31177715 aaattttggtgttggtgacaatgtggaggtttttgtagctattgggcatggattaactgttaaggagacagctgtctatttagtatatgaccagtcaaat 31177814  T
Q  241 gctttggaaattgaggcatcaaatatgatgga 272  Q
    ||| ||||||||| | ||||||| || |||||    
T  31177815 gctatggaaattgtgccatcaaacattatgga 31177846  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 114 - 265
Target Start/End: Original strand, 3319567 - 3319718
Alignment:
Q  114 tgatgaagattggcaaggtttaatattaaattttggagttggtgacaatgtggagattttcgtagctattggacatggcttgactattagagaaacaggt 213  Q
    ||||||||||||||||||  |  ||| ||| || ||||||||||||||| |||||||||| |||| |||||||||||| | |||| |||  || ||   |    
T  3319567 tgatgaagattggcaaggcgtcgtatcaaaattaggagttggtgacaatttggagatttttgtagttattggacatggatggactgttaaggagacgaat 3319666  T
Q  214 gtctatctagtatatgactagtcgaatgctttggaaattgaggcatcaaata 265  Q
    ||||||||| |||||||  |||| |||||| ||||||||||| |||||||||    
T  3319667 gtctatctaatatatgatcagtcaaatgctatggaaattgagtcatcaaata 3319718  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 115 - 262
Target Start/End: Complemental strand, 3405913 - 3405766
Alignment:
Q  115 gatgaagattggcaaggtttaatattaaattttggagttggtgacaatgtggagattttcgtagctattggacatggcttgactattagagaaacaggtg 214  Q
    |||||||||||| ||||| || ||| |||||| |||||||||||||||||||||||||| |||||| |||| ||||| ||||||  ||  || || | ||    
T  3405913 gatgaagattgggaaggtgtagtatcaaatttaggagttggtgacaatgtggagatttttgtagcttttgggcatggattgactgctaaggagaccgctg 3405814  T
Q  215 tctatctagtatatgactagtcgaatgctttggaaattgaggcatcaa 262  Q
    |||||||| |||||||  |||| | |||  ||||||||||| ||||||    
T  3405813 tctatctaatatatgatcagtcaactgcaatggaaattgagtcatcaa 3405766  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 230
Target Start/End: Original strand, 3365986 - 3366102
Alignment:
Q  114 tgatgaagattggcaaggtttaatattaaattttggagttggtgacaatgtggagattttcgtagctattggacatggcttgactattagagaaacaggt 213  Q
    ||||||||||||||||||  || | | |||||| ||||||||| ||||| |||||||||| ||||||||||| ||||| || ||| |||  ||||| | |    
T  3365986 tgatgaagattggcaaggcatagtgtcaaatttaggagttggtaacaatttggagatttttgtagctattgggcatggatttactgttaaggaaactgct 3366085  T
Q  214 gtctatctagtatatga 230  Q
    || |||||| |||||||    
T  3366086 gtttatctaatatatga 3366102  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 229
Target Start/End: Complemental strand, 3396963 - 3396848
Alignment:
Q  114 tgatgaagattggcaaggtttaatattaaattttggagttggtgacaatgtggagattttcgtagctattggacatggcttgactattagagaaacaggt 213  Q
    ||||||||||||| ||||| || | | ||||||   ||||| |||||||||||||||||| ||||||||||| ||||| |||||| |||  || || | |    
T  3396963 tgatgaagattgggaaggtgtagtgtcaaatttaaaagttgatgacaatgtggagatttttgtagctattgggcatggattgactgttaaggagacggct 3396864  T
Q  214 gtctatctagtatatg 229  Q
    ||||||||| ||||||    
T  3396863 gtctatctaatatatg 3396848  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 191
Target Start/End: Complemental strand, 3389436 - 3389359
Alignment:
Q  114 tgatgaagattggcaaggtttaatattaaattttggagttggtgacaatgtggagattttcgtagctattggacatgg 191  Q
    |||||||||||||||||   |  ||| ||| || |||||||||||||||||||||||||| ||| ||||||| |||||    
T  3389436 tgatgaagattggcaagacgtggtatcaaaattaggagttggtgacaatgtggagatttttgtatctattgggcatgg 3389359  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 3430248 - 3430327
Alignment:
Q  114 tgatgaagattggcaaggttt--aatattaaattttggagttggtgacaatgtggagattttcgtagctattggacatgg 191  Q
    |||||||||||||||| || |  | ||| |||||| |||||||||||||||||||||| ||| |||||| |||| |||||    
T  3430248 tgatgaagattggcaaagtgtgtagtatcaaatttaggagttggtgacaatgtggagaattttgtagcttttgggcatgg 3430327  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 114 - 173
Target Start/End: Complemental strand, 8370283 - 8370224
Alignment:
Q  114 tgatgaagattggcaaggtttaatattaaattttggagttggtgacaatgtggagatttt 173  Q
    ||||||||||||||||||| || ||| |||||| ||||||||||||||||||||||||||    
T  8370283 tgatgaagattggcaaggtgtagtatcaaatttaggagttggtgacaatgtggagatttt 8370224  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 115 - 262
Target Start/End: Complemental strand, 6904067 - 6903920
Alignment:
Q  115 gatgaagattggcaaggtttaatattaaattttggagttggtgacaatgtggagattttcgtagctattggacatggcttgactattagagaa-acaggt 213  Q
    ||||||||||||||  || |||||| |||||| | |||||| |||| ||||| |||||| |||||| |||| ||||| |||||| ||| |||| |||| |    
T  6904067 gatgaagattggcagagtgtaatatcaaatttagcagttggggacagtgtggggatttttgtagcttttgggcatggattgactgtta-agaagacagtt 6903969  T
Q  214 gtctatctagtatatgactagtcgaatgctttggaaattgaggcatcaa 262  Q
    |||||||||  ||||| | |||| | |||| || |||||||| ||||||    
T  6903968 gtctatctaacatatgccgagtcaagtgctatgcaaattgagccatcaa 6903920  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 173
Target Start/End: Complemental strand, 14765895 - 14765836
Alignment:
Q  114 tgatgaagattggcaaggtttaatattaaattttggagttggtgacaatgtggagatttt 173  Q
    ||||||||||||||||||| ||  || |||||| ||||||||||||||||| ||||||||    
T  14765895 tgatgaagattggcaaggtgtagcatcaaatttaggagttggtgacaatgttgagatttt 14765836  T

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Target: scaffold0468 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 229
Target Start/End: Complemental strand, 3457 - 3344
Alignment:
Q  116 atgaagattggcaaggtttaatattaaattttggagttggtgacaatgtggagattttcgtagctattggacatggcttgactattagagaa-acaggtg 214  Q
    |||||||||||||  || |||||| |||||| | |||||| |||||||||| |||||| |||||| |||| ||||| |||||  ||| |||| |||| ||    
T  3457 atgaagattggcagagtgtaatatcaaatttagcagttggggacaatgtggggatttttgtagcttttgggcatggattgaccgtta-agaagacagttg 3359  T
Q  215 tctatctagtatatg 229  Q
    |||||||| ||||||    
T  3358 tctatctaatatatg 3344  T

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