View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_97 (Length: 292)
Name: NF19358_low_97
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_97 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 3874652 - 3874372
Alignment:
| Q |
1 |
ttttctacgagcttgctagctccagcttagattaatcacttgttggttgctgatagttctggagtttctagttctttgttgattgttctctatctttnnn |
100 |
Q |
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| T |
3874652 |
ttttctacgagcttgctagccccagcttagattaatcacttgttagttgctgatggttctggagtttctagttctttgttgattgttctctatctttcaa |
3874553 |
T |
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| Q |
101 |
nnnnnnnnnnnnnnnnnnnngattgcgcacattgatattcatttttattcgggtcccacattagtacatgaatgagaatatagtagt----gagaatccg |
196 |
Q |
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| T |
3874552 |
aaaagaaaatggttaaaaaagattgcgcacattgatattcatttttattcgggtcccacattagtacatgaatgagaatatagtagttagtgagaatccg |
3874453 |
T |
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| Q |
197 |
atgctctttagttagtgcatactttgaaaagcaatattccacttaccatatcaatatttttgtgttgcaattccatcatat |
277 |
Q |
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| T |
3874452 |
atgctctttagttagtgcatactttgaaaagcaatattccacttaccatatcaacatttttgtgttgcaattccatcatat |
3874372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 187 - 277
Target Start/End: Complemental strand, 3885009 - 3884922
Alignment:
| Q |
187 |
tgagaatccgatgctctttagttagtgcatactttgaaaa-gcaatattccacttaccatatcaatatttttgtgttgcaattccatcatat |
277 |
Q |
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| T |
3885009 |
tgagaatccgatgctctttagt----gcttactttgaaaaagcaatattccacttaccatatcaatatttttgtgttgcaatttcatcatat |
3884922 |
T |
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