View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19359_low_1 (Length: 429)
Name: NF19359_low_1
Description: NF19359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19359_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 4 - 414
Target Start/End: Complemental strand, 45168313 - 45167906
Alignment:
| Q |
4 |
atccatattcaatactaaaatgtttagataaacattgttgttgattatgaacatcaaccttttgaaaaatagcataaacaaaaattgattactttaaaat |
103 |
Q |
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| T |
45168313 |
atccatattcaatactaaaatgtttaaataaacattgttgttaattatgaacatcaaccttttgaaaaatagcataaacaaaaattgattactttaaaat |
45168214 |
T |
|
| Q |
104 |
aggatcactaaaagaaaggtccttttgaattatacaacaacacctacaatatgagacaaacaacatttatcaaattgtaacaatgcccgaagaactcgca |
203 |
Q |
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| T |
45168213 |
aggatcactaaaagaaaggtctttttgaattatacaacaacacctacaatctgaggcaa-caacatttatcaaattgtaacagtgcccgaagaactcgca |
45168115 |
T |
|
| Q |
204 |
ctccaactcataacatgcttggaaggtgatattagatataggtatgtgatctatgcatatatatcaccactcatcatcacgtgtgaatatgcatcatgtc |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
45168114 |
ctccaactcataacatgcttggaaggtgatattagatataggtatgtgatctatgcatatat--caccactcatcatcacgtgtgaatatgcatcatgtc |
45168017 |
T |
|
| Q |
304 |
aatttgttctttcatgagtttgtttatagtggaatactttacacaccctaaatgagaatttccaaaacaattaacatgataatatatgaacgtattttcc |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45168016 |
aatttgttctttcatgagtttgtttatagtggaatactttacacaccctaaatgagaatttccaaaacaattaacatgataatatatgaacgtattttcc |
45167917 |
T |
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| Q |
404 |
tacaaatatat |
414 |
Q |
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| T |
45167916 |
tacaaatatat |
45167906 |
T |
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