View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1935_high_2 (Length: 283)
Name: NF1935_high_2
Description: NF1935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1935_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 29 - 279
Target Start/End: Original strand, 4946744 - 4946994
Alignment:
| Q |
29 |
aatcataactatagctgaacttgaaatattaaagtgattcatcttagaatcctagttctcgaataatttttggccaaacattattttctggtcgaacttt |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4946744 |
aatcataactatagctgaacttgaaatattaaagtgattcatcttagaatcctagctctcgaataatttttggccaaacattattttctggtcgaacttt |
4946843 |
T |
|
| Q |
129 |
ggattatgatgtttactccgataaaatgaatttgcatatgtatagaagaagaaagcttactctttaactaattttgaacagggaatggaggatctcaatt |
228 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4946844 |
ggattatgatgtttactcggataaaatgaatttgcatatgtatagaagaagaaagcttactctttaaataattttgaacagggaatggaggatctcaatt |
4946943 |
T |
|
| Q |
229 |
tctttaaccaatacacgatggattctcttgcatctccaatattcttcgaca |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
4946944 |
tctttaaccaatacacgatggattctcttgcatctccaacattattcgaca |
4946994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University