View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1935_low_1 (Length: 475)
Name: NF1935_low_1
Description: NF1935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1935_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 129 - 468
Target Start/End: Original strand, 39030680 - 39031020
Alignment:
| Q |
129 |
gtaataagtaaacaataatttaaacattgaactnnnnnnntaaaatctaaacgtgtgaaaaagtccccactagccaaccccttttcctatgtgtgataag |
228 |
Q |
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| T |
39030680 |
gtaataagtaaacaataatttaaacattgaactaaaaaa-taaaatctaaacgtgtgaaaaagtccccactagccaaccccttttc-tatgtgtgataag |
39030777 |
T |
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| Q |
229 |
tttatgtc--aagacttaattaatgaccataattagcttagagctttttgctaaaagtgtttaagaatggcatgaagatgaaaagcaatggaagcattaa |
326 |
Q |
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| T |
39030778 |
tttatgtcttaagacttatttaatgaccataattagcttagagctttttgctaaaagtgtttaagaatggcatgaagatgaaaagcaatggaagcattaa |
39030877 |
T |
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| Q |
327 |
tcttagttagggcacgtgaaagaaagagagaaagcaaagataggtataattgtctcttccaagtcttctttcggcaccttcatatctttgttgnnnnnnn |
426 |
Q |
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| T |
39030878 |
tcttagttagggcacgtgaaagaaagagagaaagcaaagataggtataattgtctcttccaagtcttctttcggcaccttcatatctttgttgccccccc |
39030977 |
T |
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| Q |
427 |
ttgggggccactagtttaatatcctctc-ttgtcttcatatca |
468 |
Q |
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| T |
39030978 |
ttgggggccactagtttaatatcctctctttgtcttcacatca |
39031020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 39030519 - 39030556
Alignment:
| Q |
94 |
ctattaagctaataagctctaacacatcttaaaacgta |
131 |
Q |
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| T |
39030519 |
ctattaagctaataagctctaacacatcttaaaacgta |
39030556 |
T |
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