View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1935_low_2 (Length: 399)
Name: NF1935_low_2
Description: NF1935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1935_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 63 - 320
Target Start/End: Complemental strand, 868021 - 867763
Alignment:
| Q |
63 |
atgaagatgtaatcaatgtgttgtacctttgggctcatccaatttaaaagattgaaacaggtctaaataggttagctcagattcaacaatcaaaagcacc |
162 |
Q |
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| T |
868021 |
atgaagatgtaatcaatgtgttgtacctttgggctcatccaatttaaaagattgaaacaggtctaaataggttagctcagattcaacaatcaaaagcact |
867922 |
T |
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| Q |
163 |
ggaaaagaaaacatatatagcgaaatagatcatttttgcagaat-----acatatttattcatgatggtagtattaatattctgaataaaacatttttgc |
257 |
Q |
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| T |
867921 |
ggaaaagaaaacatatatagcgaaatagatca-----aaagaatgagcaacatatttattcatgatggtagtattaatattctgaataaaacatttttgc |
867827 |
T |
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| Q |
258 |
agaatacacacatagaagcaataaaagat-aaggatgaactaaaaaagacaatatgtagattct |
320 |
Q |
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| T |
867826 |
agaatacacacatagaagcaataaaagataaaggatgaactaaaaaagacaatatgtagattct |
867763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 871727 - 871649
Alignment:
| Q |
207 |
acatatttattcatgatggtagtattaatattctgaataaaaca-tttttgcagaatacacacatagaagcaataaaag |
284 |
Q |
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| T |
871727 |
acatatttatccatgatggtggtattaatattctgaatagaacactttttgcagaatacacacataaaagaaagaaaag |
871649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 288
Target Start/End: Complemental strand, 876774 - 876737
Alignment:
| Q |
251 |
tttttgcagaatacacacatagaagcaataaaagataa |
288 |
Q |
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| T |
876774 |
tttttgcagaatacacacataaaagcaataaaagataa |
876737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 148 - 183
Target Start/End: Complemental strand, 872363 - 872328
Alignment:
| Q |
148 |
acaatcaaaagcaccggaaaagaaaacatatatagc |
183 |
Q |
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| T |
872363 |
acaatcaaaagcaccggaaaaggaaacatatatagc |
872328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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