View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1935_low_5 (Length: 303)
Name: NF1935_low_5
Description: NF1935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1935_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 144 - 242
Target Start/End: Original strand, 17311411 - 17311509
Alignment:
| Q |
144 |
gatataaccaaatcaaatgtccaggctccatgttattcgtatgttgacaaaccacgctcatagatacaaatcattgaagaaatttgattccgttctctg |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17311411 |
gatataaccaaatcaaatgtccaggctccatgttattcgtatgatgacaaaccacgcgcataaatacaaatcattgaagaaatttgattccgctctctg |
17311509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 17334636 - 17334693
Alignment:
| Q |
144 |
gatataaccaaatcaaatgtccaggctccatgttattcgtatgttgacaaaccacgct |
201 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||| |||| |||||||||| |
|
|
| T |
17334636 |
gatataaccaaatcaaatatccaggctccatgttattcatattttgataaaccacgct |
17334693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 233
Target Start/End: Original strand, 17334759 - 17334791
Alignment:
| Q |
201 |
tcatagatacaaatcattgaagaaatttgattc |
233 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
17334759 |
tcataaatacaaatcattgaagaaatttgattc |
17334791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University