View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1935_low_8 (Length: 251)
Name: NF1935_low_8
Description: NF1935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1935_low_8 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 251
Target Start/End: Complemental strand, 30769131 - 30768891
Alignment:
| Q |
15 |
tatactacatatgatacataacttcaatcattttcaagcatcctatttcagatatgcaataagatcaacacgttcctggggcttcttaggagcaggaaat |
114 |
Q |
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| T |
30769131 |
tatactacatatgatacataacttcaatcattttcaagcatcctatttcagatatgcaataagatcaacacgttcctggggcttcttaagagcaggaaat |
30769032 |
T |
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| Q |
115 |
accatcttcgtatcgaggatatactacataagaatnnnnnnntaatacacaaatcagtgatgtatttaatcgaaataagctttcaaggttacctctcagt |
214 |
Q |
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| T |
30769031 |
accatcttcgtatcgaggatatactacataagaataaaaaaataatacacaaatcagtgatgtatttaatcgaaataagctttcaatgttacctctcagt |
30768932 |
T |
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| Q |
215 |
at----aatcataataaattaatagaacaagagcctattca |
251 |
Q |
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| T |
30768931 |
ataatcaatcataataaattaatagaacaagagcctattca |
30768891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 122
Target Start/End: Complemental strand, 30772945 - 30772883
Alignment:
| Q |
60 |
tttcagatatgcaataagatcaacacgttcctggggcttcttaggagcaggaaataccatctt |
122 |
Q |
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| T |
30772945 |
tttcagatatgcaataagatcagcacgttcttgaggcttcttaagaccaggaaaaaccatctt |
30772883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 1793175 - 1793114
Alignment:
| Q |
61 |
ttcagatatgcaataagatcaacacgttcctggggcttcttaggagcaggaaataccatctt |
122 |
Q |
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| T |
1793175 |
ttcagatatgcaataagatcagcgcgttcttggggtttctttagaccgggaaataccatctt |
1793114 |
T |
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