View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1935_low_9 (Length: 249)

Name: NF1935_low_9
Description: NF1935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1935_low_9
NF1935_low_9
[»] chr6 (13 HSPs)
chr6 (1-231)||(34109278-34109506)
chr6 (6-231)||(34106403-34106618)
chr6 (4-230)||(34091556-34091773)
chr6 (23-82)||(34119935-34119997)
chr6 (23-82)||(34147096-34147158)
chr6 (23-82)||(34159712-34159774)
chr6 (179-231)||(34120046-34120101)
chr6 (179-231)||(34147207-34147262)
chr6 (179-231)||(34159823-34159878)
chr6 (7-82)||(34115282-34115360)
chr6 (97-134)||(34120006-34120043)
chr6 (42-82)||(34149518-34149558)
chr6 (42-82)||(34162134-34162174)
[»] scaffold0620 (1 HSPs)
scaffold0620 (4-230)||(6890-7107)


Alignment Details
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 34109278 - 34109506
Alignment:
Q  1 ctacaaatgaatcattcaattttagataccccaaaaggagtagatacccgaaaaggagatcttgggtaaaatccaaggcaagnnnnnnnnnnnnncttct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||             |||||    
T  34109278 ctacaaatgaatcattcaattttagataccccaaaaggagtagatacccgaaaaggagatcttgggtaaaatctaaggcaagttttttttctt--cttct 34109375  T
Q  101 gaaaacgtttaggaacttgtagaaatgcctttgaatcgaacaatattagttccctgtccatatctgagttcttcaacgtaaatctctatatatgcagaat 200  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  34109376 gaaaacgtttaggaacttgtagaaatgcatttgaatcgaacaatattagttccctgtccaaatctgagttcttcaacgtaaatctctatatatgcagaaa 34109475  T
Q  201 tcattggtgaagatgtcgcatgatgatgtcc 231  Q
    ||||||| |||||||||||||||||||||||    
T  34109476 tcattggcgaagatgtcgcatgatgatgtcc 34109506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 6 - 231
Target Start/End: Original strand, 34106403 - 34106618
Alignment:
Q  6 aatgaatcattcaattttagataccccaaaaggagtagatacccgaaaaggagatcttgggtaaaatccaaggcaagnnnnnnnnnnnnncttctgaaaa 105  Q
    |||||||||||||||||||||||| | ||||||||||||||||||| ||||||| ||||||||||||||||||||||              ||||| |||    
T  34106403 aatgaatcattcaattttagatacgcaaaaaggagtagatacccgacaaggagagcttgggtaaaatccaaggcaagtttt----------ttctggaaa 34106492  T
Q  106 cgtttaggaacttgtagaaatgcctttgaatcgaacaatattagttccctgtccatatctgagttcttcaacgtaaatctctatatatgcagaattcatt 205  Q
     ||| ||| |||||||||||||||||||| ||||  |||||||||||| ||||||||||||||||||| ||  | ||||||||||| ||||||| | | |    
T  34106493 agttaagggacttgtagaaatgcctttgattcgataaatattagttccatgtccatatctgagttctttaatattaatctctatatctgcagaagttagt 34106592  T
Q  206 ggtgaagatgtcgcatgatgatgtcc 231  Q
    ||   ||||||| |||||||||||||    
T  34106593 ggcagagatgtcacatgatgatgtcc 34106618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 4 - 230
Target Start/End: Original strand, 34091556 - 34091773
Alignment:
Q  4 caaatgaatcattcaattttagataccccaaaaggagtagatacccgaaaaggagatcttgggtaaaatccaaggcaagnnnnnnnnnnnnncttctgaa 103  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||              || |  |    
T  34091556 caaatgaatcattcaagtttacataccccaaaaggagtagatacccgaaaaggagatcttgggtaaaatccaaggcaagttttt---------tttttga 34091646  T
Q  104 aacgtttaggaacttgtagaaatgcctttgaatcgaacaatattagttccctgtccatatctgagttcttcaacgtaaatctctatatatgcagaattca 203  Q
    || ||| |||||| ||||||||||||||||| || |||||||||||||   | || |||||||||||||||||  | ||||| ||||| ||||||| | |    
T  34091647 aatgttaaggaacatgtagaaatgcctttgattctaacaatattagttatgtttctatatctgagttcttcaatattaatctttatatctgcagaagtta 34091746  T
Q  204 ttggtgaagatgtcgcatgatgatgtc 230  Q
     |||   ||||||||||||||||||||    
T  34091747 gtggcagagatgtcgcatgatgatgtc 34091773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 34119935 - 34119997
Alignment:
Q  23 tagataccccaaaaggagta---gatacccgaaaaggagatcttgggtaaaatccaaggcaag 82  Q
    ||||||||||||||||||||   ||||||| ||||||||||||||||||||||||||||||||    
T  34119935 tagataccccaaaaggagtactagatacccaaaaaggagatcttgggtaaaatccaaggcaag 34119997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 34147096 - 34147158
Alignment:
Q  23 tagataccccaaaaggagtag---atacccgaaaaggagatcttgggtaaaatccaaggcaag 82  Q
    ||||||||||||||||||||    |||||| ||||||||||||||||||||||||||||||||    
T  34147096 tagataccccaaaaggagtactacatacccaaaaaggagatcttgggtaaaatccaaggcaag 34147158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 34159712 - 34159774
Alignment:
Q  23 tagataccccaaaaggagtag---atacccgaaaaggagatcttgggtaaaatccaaggcaag 82  Q
    ||||||||||||||||||||    |||||| ||||||||||||||||||||||||||||||||    
T  34159712 tagataccccaaaaggagtactacatacccaaaaaggagatcttgggtaaaatccaaggcaag 34159774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 34120046 - 34120101
Alignment:
Q  179 taaatctctatatatgcagaattcattgg---tgaagatgtcgcatgatgatgtcc 231  Q
    ||||||||||||| |||||||||||||||   ||||||||||||||||||||||||    
T  34120046 taaatctctatatctgcagaattcattggtgatgaagatgtcgcatgatgatgtcc 34120101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 34147207 - 34147262
Alignment:
Q  179 taaatctctatatatgcagaattcattgg---tgaagatgtcgcatgatgatgtcc 231  Q
    ||||||||||||| |||||||||||||||   ||||||||||||||||||||||||    
T  34147207 taaatctctatatctgcagaattcattggtgatgaagatgtcgcatgatgatgtcc 34147262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 34159823 - 34159878
Alignment:
Q  179 taaatctctatatatgcagaattcattgg---tgaagatgtcgcatgatgatgtcc 231  Q
    ||||||||||||| |||||||||||||||   ||||||||||||||||||||||||    
T  34159823 taaatctctatatctgcagaattcattggtgatgaagatgtcgcatgatgatgtcc 34159878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 34115282 - 34115360
Alignment:
Q  7 atgaatcattcaatttt---agataccccaaaaggagtagatacccgaaaaggagatcttgggtaaaatccaaggcaag 82  Q
    |||||||||||||||||   |||||| ||||| |||||| |||||| | ||||||||||| || |||||||||||||||    
T  34115282 atgaatcattcaatttttggagatactccaaacggagtaaataccccagaaggagatctttggcaaaatccaaggcaag 34115360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 134
Target Start/End: Original strand, 34120006 - 34120043
Alignment:
Q  97 ttctgaaaacgtttaggaacttgtagaaatgcctttga 134  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  34120006 ttctggaaacctttaggaacttgtagaaatgcctttga 34120043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 34149518 - 34149558
Alignment:
Q  42 agatacccgaaaaggagatcttgggtaaaatccaaggcaag 82  Q
    |||||||| ||||||||||||| || |||||||||||||||    
T  34149518 agataccccaaaaggagatctttggcaaaatccaaggcaag 34149558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 34162134 - 34162174
Alignment:
Q  42 agatacccgaaaaggagatcttgggtaaaatccaaggcaag 82  Q
    |||||||| ||||||||||||| || |||||||||||||||    
T  34162134 agataccccaaaaggagatctttggcaaaatccaaggcaag 34162174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 230
Target Start/End: Original strand, 6890 - 7107
Alignment:
Q  4 caaatgaatcattcaattttagataccccaaaaggagtagatacccgaaaaggagatcttgggtaaaatccaaggcaagnnnnnnnnnnnnncttctgaa 103  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||              || || |    
T  6890 caaatgaatcattcaagtttacataccccaaaaggagtagatacccgaaaaggagatcttgggtaaaatccaaggcaagttttt---------ttgtgga 6980  T
Q  104 aacgtttaggaacttgtagaaatgcctttgaatcgaacaatattagttccctgtccatatctgagttcttcaacgtaaatctctatatatgcagaattca 203  Q
    || ||| |||||| ||||||||||||||||| ||||||||||||||||   | ||||||||||||||||||||  | ||||| ||||| ||||||| | |    
T  6981 aatgttaaggaacatgtagaaatgcctttgattcgaacaatattagttatgtttccatatctgagttcttcaatattaatctgtatatctgcagaagtta 7080  T
Q  204 ttggtgaagatgtcgcatgatgatgtc 230  Q
     |||   ||||||||||||||||||||    
T  7081 gtggcagagatgtcgcatgatgatgtc 7107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University