View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19360_high_16 (Length: 362)

Name: NF19360_high_16
Description: NF19360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19360_high_16
NF19360_high_16
[»] chr5 (3 HSPs)
chr5 (141-289)||(27845558-27845721)
chr5 (47-127)||(27845706-27845786)
chr5 (304-362)||(27845408-27845465)
[»] chr6 (2 HSPs)
chr6 (304-362)||(20140285-20140343)
chr6 (304-362)||(22192526-22192584)


Alignment Details
Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 141 - 289
Target Start/End: Complemental strand, 27845721 - 27845558
Alignment:
Q  141 gtgtaatgaaaatgttgttagcataaggtcaatttcaaaattgatatgttttaagtctgatcta----------------ataaaaatgttgttaggatg 224  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||                ||||||||||||||||||||    
T  27845721 gtgtaatgaaaatgttgttagcataaggtcaatttcaaaatatatatgttt-aagtctgatctattatccgtcgtttgtaataaaaatgttgttaggatg 27845623  T
Q  225 gttcttccagccatatatgatatatactttgttactcaatgctagtataattcatccttataaaa 289  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27845622 gatcttccagccatatatgatatatactttgttactcaatgctagtataattcatccttataaaa 27845558  T

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Target: chr5; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 47 - 127
Target Start/End: Complemental strand, 27845786 - 27845706
Alignment:
Q  47 acatggtctttaatcggttaaaatagaaatgaatctcactgaattaggctacacataaatagcatgtgtaatgaaaatgtt 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27845786 acatggtctttaatcggttaaaatagaaatgaatctcactgaattaggctacacataaatagcatgtgtaatgaaaatgtt 27845706  T

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Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 304 - 362
Target Start/End: Complemental strand, 27845465 - 27845408
Alignment:
Q  304 aattacagtcaaagtaagtatttgcaaatggctagttaacaaaggttaaaataaagcta 362  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  27845465 aattacagtcaa-gtaagtatttgcaaatggctagttaacaaaggttaaaataaagcta 27845408  T

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Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 304 - 362
Target Start/End: Complemental strand, 20140343 - 20140285
Alignment:
Q  304 aattacagtcaaagtaagtatttgcaaatggctagttaacaaaggttaaaataaagcta 362  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  20140343 aattacagtcaaagtaagtatttgcaaatggctagttaacaatggttaaaataaagcta 20140285  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 304 - 362
Target Start/End: Original strand, 22192526 - 22192584
Alignment:
Q  304 aattacagtcaaagtaagtatttgcaaatggctagttaacaaaggttaaaataaagcta 362  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22192526 aattacagtcaaagtaagtatttgcaaatggctagttaacaatggttaaaataaagcta 22192584  T

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