View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19360_high_19 (Length: 333)
Name: NF19360_high_19
Description: NF19360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19360_high_19 |
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| [»] chr8 (3 HSPs) |
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| [»] scaffold0259 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 333
Target Start/End: Complemental strand, 41147181 - 41146866
Alignment:
| Q |
18 |
agctattacttcaatgtatatcttattcaactaagaagctatcagaatcgagtgactccgaatgctgttgacagtgatgatgacgaagtggaatttggat |
117 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41147181 |
agctattacttcaatgtatattttattcaactaagaagctatcagaatcgagtgactccgaatgctgttgacagtgatgatgacgaagtggaatttggat |
41147082 |
T |
|
| Q |
118 |
cttttgatgatggtttcggaaggaaagctatcaagcatccatctatggaattcatggagtgtacagagaacaagcaatgctttgattttgagtagacaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41147081 |
cttttgatgatggtttcggaaggaaagctatcaagcatccatctatggaattcatggagtgtacagagaacaagcaatgctttgattttgagtagacaaa |
41146982 |
T |
|
| Q |
218 |
actgtctagtgtgccgttttgaggttgaaaaagtaacttcttggatccgacttgtatacaactctctttctgctttttgctttatcaggatcgcatttag |
317 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
41146981 |
actgtctagtgtgccgttttgaggttgaaaaaataacttcttggatcagacttgtatacaactctctttctgctttctgctttatcaggaatgcatttag |
41146882 |
T |
|
| Q |
318 |
tgctgtaaaacttttt |
333 |
Q |
| |
|
||||| |||||||||| |
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|
| T |
41146881 |
tgctgcaaaacttttt |
41146866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 41172062 - 41171863
Alignment:
| Q |
18 |
agctattacttcaatgtatatcttattcaactaagaagctatcagaatcgagtgactccgaatgctgttgacagtgatgatgacgaagtggaatttggat |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||| || ||||||||||| |||||||||| |
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|
| T |
41172062 |
agctattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgaccccgaagactgttgacagcgacgatgacgaagttgaatttggat |
41171963 |
T |
|
| Q |
118 |
cttttgatgatggtttcggaaggaaagctatcaagcatccatctatggaattcatggagtgtacagagaacaagcaatgctttgattttgagtagacaaa |
217 |
Q |
| |
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|||||| ||||||||| || ||| ||||||| |||||||||| |||||| | | |||||||| |||||||||||||||||||||| |||||||||||||| |
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|
| T |
41171962 |
cttttggtgatggttttgggagggaagctatgaagcatccatatatggattacttggagtgttcagagaacaagcaatgctttgactttgagtagacaaa |
41171863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 41163945 - 41163747
Alignment:
| Q |
18 |
agctattacttcaatgtatatcttattcaactaagaagctatcagaatcgagtgactccgaatgctgttgacagtgatgatgacgaagtggaatttggat |
117 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||| | | |||| ||||| |||||||||| |
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|
| T |
41163945 |
agctattgcttcaatgtatatcttattcaactaagaagctatcggaatcgagtgaatccgaagactgttgactgcaacaatgaggaagttgaatttggat |
41163846 |
T |
|
| Q |
118 |
cttttgatgatggtttcggaaggaaagctatcaagcatccatctatggaattcatggagtgtacagagaacaagcaatgctttgattttgagtagacaa |
216 |
Q |
| |
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| |||| | ||||||| || | |||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||| |
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| T |
41163845 |
cgtttggttatggttttgggatgaaagctatcaagcatccatctatggaattcatggagtattcagagaacacacaatgctttgattttgagtagacaa |
41163747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 4e-66; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 21 - 224
Target Start/End: Complemental strand, 32657310 - 32657107
Alignment:
| Q |
21 |
tattacttcaatgtatatcttattcaactaagaagctatcagaatcgagtgactccgaatgctgttgacagtgatgatgacgaagtggaatttggatctt |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| || | ||||||||||||||||||||||| | ||||||| ||||| |
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|
| T |
32657310 |
tattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcggagactgttgacagtgatgatgacgaaatcgaatttgaatctt |
32657211 |
T |
|
| Q |
121 |
ttgatgatggtttcggaaggaaagctatcaagcatccatctatggaattcatggagtgtacagagaacaagcaatgctttgattttgagtagacaaaact |
220 |
Q |
| |
|
||| |||||||||||| |||||||||||||||| |||||| || ||||||| |||||| ||||||||||| |||||||||||||| |||||||||||| |
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|
| T |
32657210 |
ttggtgatggtttcgggaggaaagctatcaagcgtccatcaattgaattcaaggagtgctcagagaacaagtaatgctttgattttaagtagacaaaaca |
32657111 |
T |
|
| Q |
221 |
gtct |
224 |
Q |
| |
|
|||| |
|
|
| T |
32657110 |
gtct |
32657107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 21 - 219
Target Start/End: Complemental strand, 32631418 - 32631220
Alignment:
| Q |
21 |
tattacttcaatgtatatcttattcaactaagaagctatcagaatcgagtgactccgaatgctgttgacagtgatgatgacgaagtggaatttggatctt |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| || | ||||||||||||||||||||||| | ||||||| ||||| |
|
|
| T |
32631418 |
tattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcggagactgttgacagtgatgatgacgaaatcgaatttgaatctt |
32631319 |
T |
|
| Q |
121 |
ttgatgatggtttcggaaggaaagctatcaagcatccatctatggaattcatggagtgtacagagaacaagcaatgctttgattttgagtagacaaaac |
219 |
Q |
| |
|
||| |||||||||||| |||||||||||| ||| |||||| || ||||||| ||||||| ||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
32631318 |
ttggtgatggtttcgggaggaaagctatccagcgtccatcaattgaattcaaggagtgttcagagaacaagtaatgctttgattttaagtagacaaaac |
32631220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 21 - 216
Target Start/End: Complemental strand, 32600305 - 32600110
Alignment:
| Q |
21 |
tattacttcaatgtatatcttattcaactaagaagctatcagaatcgagtgactccgaatgctgttgacagtgatgatgacgaagtggaatttggatctt |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| || | ||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
32600305 |
tattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcggagactgttgacagtgatgatgacgaaatcgaatttggatctt |
32600206 |
T |
|
| Q |
121 |
ttgatgatggtttcggaaggaaagctatcaagcatccatctatggaattcatggagtgtacagagaacaagcaatgctttgattttgagtagacaa |
216 |
Q |
| |
|
||| |||||||||||| |||||||||||||||| |||| | || ||||||| ||||||| ||||||||||| ||| |||||||||| ||||||||| |
|
|
| T |
32600205 |
ttggtgatggtttcgggaggaaagctatcaagcgtccaacaattgaattcaaggagtgttcagagaacaagtaatactttgattttaagtagacaa |
32600110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 21 - 219
Target Start/End: Complemental strand, 32582172 - 32581974
Alignment:
| Q |
21 |
tattacttcaatgtatatcttattcaactaagaagctatcagaatcgagtgactccgaatgctgttgacagtgatgatgacgaagtggaatttggatctt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||| ||||||||||||||||| | ||||||| ||||| |
|
|
| T |
32582172 |
tattacttcaatgtatatcttattcaactaagaagctatcagaatcgagtgacttcggagactgtttacagtgatgatgacgaaatcgaatttgaatctt |
32582073 |
T |
|
| Q |
121 |
ttgatgatggtttcggaaggaaagctatcaagcatccatctatggaattcatggagtgtacagagaacaagcaatgctttgattttgagtagacaaaac |
219 |
Q |
| |
|
||| |||||||||||| |||||||||||||||| |||||| || ||||||| ||||||| ||||||| ||| |||||||||||||| ||| |||||||| |
|
|
| T |
32582072 |
ttggtgatggtttcgggaggaaagctatcaagcgtccatcaattgaattcaaggagtgttcagagaataagtaatgctttgattttaagttgacaaaac |
32581974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 26404796 - 26404591
Alignment:
| Q |
18 |
agctattacttcaatgtatatcttattcaactaagaagctatcagaatcgagtgactccgaatgctgttgacagtgatgatgacgaagtggaatttggat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||| ||| ||||||||||||||||||| || |
|
|
| T |
26404796 |
agctattacttcaatgtatatcttattcaactaagaatctatcaaaatcgagtgactccgaacactgttgacaatgacgatgacgaagtggaatttgaat |
26404697 |
T |
|
| Q |
118 |
cttttgatgatggtttcggaaggaaagctatcaagcatccatctatggaattcatggagtgtacagagaacaagcaatgctttgattttgagtagacaaa |
217 |
Q |
| |
|
|||||| ||||||||| | | ||||||||||||||||| | ||| || ||| || |||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
26404696 |
cttttggtgatggttttgaagggaaagctatcaagcattcctct-tgaaatacacggagtgtacaaagaacaagcaatgctttgattttgagcagacaaa |
26404598 |
T |
|
| Q |
218 |
actgtct |
224 |
Q |
| |
|
| ||||| |
|
|
| T |
26404597 |
attgtct |
26404591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 111 - 219
Target Start/End: Complemental strand, 26398313 - 26398205
Alignment:
| Q |
111 |
tttggatcttttgatgatggtttcggaaggaaagctatcaagcatccatctatggaattcatggagtgtacagagaacaagcaatgctttgattttgagt |
210 |
Q |
| |
|
|||||||| |||| |||||||||||| ||||||||||||||||||||||||| ||| |||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
26398313 |
tttggatcatttggtgatggtttcgggaggaaagctatcaagcatccatctacggatttcatggagtgttcagagaacacgcaatgctttgattttgagt |
26398214 |
T |
|
| Q |
211 |
agacaaaac |
219 |
Q |
| |
|
||||||||| |
|
|
| T |
26398213 |
agacaaaac |
26398205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 111 - 219
Target Start/End: Original strand, 21016101 - 21016209
Alignment:
| Q |
111 |
tttggatcttttgatgatggtttcggaaggaaagctatcaagcatccatctatggaattcatggagtgtacagagaacaagcaatgctttgattttgagt |
210 |
Q |
| |
|
|||||||| |||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
21016101 |
tttggatcatttggtgatggtttcgggaggaaagctatcaagcatccatctatggatttcatggagtgttcagagaacacgcaatgctttgattttgagt |
21016200 |
T |
|
| Q |
211 |
agacaaaac |
219 |
Q |
| |
|
||||||||| |
|
|
| T |
21016201 |
agacaaaac |
21016209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 21 - 135
Target Start/End: Complemental strand, 21508 - 21394
Alignment:
| Q |
21 |
tattacttcaatgtatatcttattcaactaagaagctatcagaatcgagtgactccgaatgctgttgacagtgatgatgacgaagtggaatttggatctt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| | | | ||||| ||||||||||||||| | ||||||| ||||| |
|
|
| T |
21508 |
tattacttcaatgtatatcttattcaactaagaagctatcagaatcaagtgacttcaaggaccgttgatagtgatgatgacgaaatcgaatttgaatctt |
21409 |
T |
|
| Q |
121 |
ttgatgatggtttcg |
135 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
21408 |
ttggtgatggtttcg |
21394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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