View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19360_high_24 (Length: 281)
Name: NF19360_high_24
Description: NF19360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19360_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 8 - 262
Target Start/End: Complemental strand, 38850181 - 38849930
Alignment:
| Q |
8 |
tataaatcttgaatgtggcagtaatacaaattaacaagtaccactacttggatccgtatcatgatgttaatgtttttaatgatttggcaataacatattc |
107 |
Q |
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| T |
38850181 |
tataaatcttgaatgtggcagtaatacaaattaacaagtaccactacttggatccgtatcatgatgttaatgtttttaatgatttggcaataacatattc |
38850082 |
T |
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| Q |
108 |
gcacatagtgaattaataaccgcggaagacaagaatttttagtcatggttttatcattaaaagcgataccacttacttgcttgcatccatatcctgattt |
207 |
Q |
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| T |
38850081 |
gcaga--gtgaattaataaccgcggaagacaagaatttt-agtcatggttttatcattaaaagcgataccacttacttgcttgcatccatatcttgattt |
38849985 |
T |
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| Q |
208 |
gttggatatcactactgtcactgtttctttgtacctgcatcttgtgagagattga |
262 |
Q |
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| T |
38849984 |
gttggatatcactactgtcactgtttctttgtacctgcatcttgtgagagattga |
38849930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 259
Target Start/End: Original strand, 38859901 - 38859968
Alignment:
| Q |
192 |
atccatatcctgatttgttggatatcactactgtcactgtttctttgtacctgcatcttgtgagagat |
259 |
Q |
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| T |
38859901 |
atccgtatcgtgatttgttggatatcactacttttatagtttctttgcacctgcatcctgtgagagat |
38859968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 174
Target Start/End: Original strand, 38866092 - 38866143
Alignment:
| Q |
124 |
taaccgcggaagacaagaatt-tttagtcatggttttatcattaaaagcgat |
174 |
Q |
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| T |
38866092 |
taaccacggaagacaagaattatttagtcatggttttatcattaaaaacgat |
38866143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 38859874 - 38859914
Alignment:
| Q |
32 |
tacaaattaacaagtaccactacttggatccgtatcatgat |
72 |
Q |
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| T |
38859874 |
tacaaattaacaagtaccactactggtatccgtatcgtgat |
38859914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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