View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19360_high_33 (Length: 245)
Name: NF19360_high_33
Description: NF19360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19360_high_33 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 13770944 - 13770724
Alignment:
| Q |
16 |
cacaacaaggtgttcgtgtttggctaggtactttctcaacagctgaagaagcagctagagcctacgacactgcggccaagcgcattcgcggcgacaaggc |
115 |
Q |
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| T |
13770944 |
cacaacaaggtgttcgtgtttggctaggtactttctcaacagctgaagaagcagctagagcctacgacaccgcggccaagcgcattcgcggcgacaaggc |
13770845 |
T |
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| Q |
116 |
taagctcaatttccctgacacttctgctgatgctgctgtcaccgctcctccagcaaagaagcagtgcgttagctctgatcaagccagttcccaagctagc |
215 |
Q |
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| T |
13770844 |
taagctcaatttccctgacac---------tcctgctgttaccgctcctccagcaaagaagcagtgtgttagctctgatcaagccagttcccaagctagc |
13770754 |
T |
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| Q |
216 |
tctgagtcagctgggtctgggtttgagctt |
245 |
Q |
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| T |
13770753 |
tctgagtcagctgggtctgggtttgagctt |
13770724 |
T |
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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 4958288 - 4958470
Alignment:
| Q |
16 |
cacaacaaggtgttcgtgtttggctaggtactttctcaacagctgaagaagcagctagagcctacgacactgcggccaagcgcattcgcggcgacaaggc |
115 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| ||||||||| || | | || || | || | | |||| | || ||||||| | |
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| T |
4958288 |
cacaacaaggtgttcgtgtttggcttggtactttctcaacagttgaagaagccgccataatttatgatgtcgtagctaggtgcatacacgacgacaagac |
4958387 |
T |
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| Q |
116 |
taagctcaatttccctgacacttctgctgatgctgctgtcaccgctcctccagcaaagaagcagtgcgttagctctgatcaagc |
199 |
Q |
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| T |
4958388 |
taagctcaatttccctgaaactcatgctgatgttgttg-caccactcctccaacaaagaagcagtgtcttagccctgatcaagc |
4958470 |
T |
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