View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19360_high_39 (Length: 202)
Name: NF19360_high_39
Description: NF19360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19360_high_39 |
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Alignment Details
Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 60 - 187
Target Start/End: Original strand, 8994203 - 8994330
Alignment:
| Q |
60 |
acgcagattgttcctgttcttctcaaaaccagatactgatgtttccatgggcaatgatcactttgataatcatgtgtggtttgtggaagctctgaacaac |
159 |
Q |
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| T |
8994203 |
acgcagattgttcctattcttctcaaaaccagatactgatgtttccatgggtaatgatcactttgataatcatgtgtggtttgtggaagctctgaacaaa |
8994302 |
T |
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| Q |
160 |
tcagggattctctctcatgttgtctctg |
187 |
Q |
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| T |
8994303 |
tcagggattctctctcgtgttgtttctg |
8994330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 60 - 187
Target Start/End: Original strand, 9028860 - 9028987
Alignment:
| Q |
60 |
acgcagattgttcctgttcttctcaaaaccagatactgatgtttccatgggcaatgatcactttgataatcatgtgtggtttgtggaagctctgaacaac |
159 |
Q |
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| T |
9028860 |
acgcagattgttcctattcttctcaaaaccagatactgatgtttccatgggtaatgatcactttgataatcatgtgtggtttgtggaagctctgaacaaa |
9028959 |
T |
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| Q |
160 |
tcagggattctctctcatgttgtctctg |
187 |
Q |
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| T |
9028960 |
tcagggattctctctcgtgttgtttctg |
9028987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 9019407 - 9019458
Alignment:
| Q |
46 |
ccttctccttctcgacgcagattgttcctgttcttctcaaaaccagatactg |
97 |
Q |
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| T |
9019407 |
ccttccccttctcgactcagattgttcatgttcatctcaaaaccagatactg |
9019458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 7e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 22 - 182
Target Start/End: Complemental strand, 44884339 - 44884173
Alignment:
| Q |
22 |
gagtatgatcatttgtcgtcaaacccttctccttc------tcgacgcagattgttcctgttcttctcaaaaccagatactgatgtttccatgggcaatg |
115 |
Q |
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| T |
44884339 |
gagtatgatcgtttgtcttcaaacccttctccttcaccttctcgactcagattgttcctcttcttctcaaaaccagatactgctgtttccatgggaaatg |
44884240 |
T |
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| Q |
116 |
atcactttgataatcatgtgtggtttgtggaagctctgaacaactcagggattctctctcatgttgt |
182 |
Q |
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| T |
44884239 |
gtcacttttataatcatgcatggtttgtggaagctctcaacaactcagggattctgtctcgtgttgt |
44884173 |
T |
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